Skip Header

Contribute Send feedback
Read comments (?) or add your own

D1B1Z3 (D1B1Z3_SULD5) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Isocitrate dehydrogenase, NADP-dependent EMBL ACZ12113.1
EC=1.1.1.42 EMBL ACZ12113.1
Gene names
Ordered Locus Names:Sdel_1089 EMBL ACZ12113.1
OrganismSulfurospirillum deleyianum (strain ATCC 51133 / DSM 6946 / 5175) [Complete proteome] [HAMAP] EMBL ACZ12113.1
Taxonomic identifier525898 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Campylobacteraceae › Sulfurospirillum ›

Protein attributes

Sequence length745 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region134 – 1418Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5511Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5551Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1471Substrate By similarity PIRSR PIRSR009407-2
Binding site5501Substrate By similarity PIRSR PIRSR009407-2
Site2571Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4221Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
D1B1Z3 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 5ED66FBE19E81145

FASTA74582,954
        10         20         30         40         50         60 
MAHTPHKIIY TQVDEAPALA TYSLLPIIKA FVKRSSIKIE TRDISLSGRI LAHFSDYLTN 

        70         80         90        100        110        120 
EQRVNDDLAY LGTLANTPEA NIIKLPNISA SLPQLNAAIK ELQDKGYLIP SYPENPANEK 

       130        140        150        160        170        180 
EQEIKARYAK VLGSAVNPVL REGNSDRRAP LCVKEYVRKN PHRMGEWHQN SRSHVAYMHE 

       190        200        210        220        230        240 
GDFYGNEKSI TMDKATTLRI ELLSSEGKTT VLKEKLELLE GEIIDGTYMS ASKLAQFYET 

       250        260        270        280        290        300 
QMEEAKAQNL LLSLHLKATM MKVSDPIMFG YAVKTYFKEV FEKYAATFER LGVNANNGLG 

       310        320        330        340        350        360 
DVYAKIATLP EREKNAIEAD IEACYTKRAS LAMVNSDKGI TNLHVPSDVI IDASMPACIR 

       370        380        390        400        410        420 
ESGKMWGKDG ALHETKALIP DRAYARIYEE TMNFCRQNGA LDPKTMGSVP NVGLMAQKAE 

       430        440        450        460        470        480 
EYGSHDKTFE IPYAGVVRMV ESENGAVLME HRVEKGDIYR ACQAKDAPIR DWVKLAISRA 

       490        500        510        520        530        540 
RLSQTPAIFW LDDKRAHDAQ MIKKVEHYLK AYDLSGLDIK IMSPEDAIKL SLERIVKGLD 

       550        560        570        580        590        600 
TIAVTGNVLR DYLTDLFPIL EVGTSAKMLS IVPLMKGGGL FETGAGGSAP KHVQQFVEEN 

       610        620        630        640        650        660 
HLRWDSLGEF MALSASLEHL STVMGNKQAA ILAKTLDSAT GKVLDEKKSP SPKVGELDNR 

       670        680        690        700        710        720 
GSHFYLALYW AEALSQQDDD ENLAIAFQPL AEALRVNEKT IVEELNSVQG KRVDLGGYYK 

       730        740 
LDVEKVNKAM RPSPTFNHAL EIFNA

« Hide

References

[1]"The complete genome of Sulfurospirillum deleyianum DSM 6946."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Munk A.C., Lu M., Brettin T., Detter J.C., Han C. expand/collapse author list , Tapia R., Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Aumann P., Schneider S., Lang E., Spring S., Klenk H.P., Eisen J.A.
Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51133 / DSM 6946 / 5175.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001816 Genomic DNA. Translation: ACZ12113.1.
RefSeqYP_003304148.1. NC_013512.1.

3D structure databases

ProteinModelPortalD1B1Z3.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACZ12113; ACZ12113; Sdel_1089.
GeneID8592627.
KEGGsdl:Sdel_1089.
PATRIC32482965. VBISulDel109514_1106.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000240860.
KOK00031.
OMAFRMCQTK.

Enzyme and pathway databases

BioCycSDEL525898:GHVA-1118-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD1B1Z3_SULD5
AccessionPrimary (citable) accession number: D1B1Z3
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info