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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Sterm_3249

Organism
Sebaldella termitidis (strain ATCC 33386 / NCTC 11300)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi103Calcium 1UniRule annotation1
Metal bindingi184Calcium 2UniRule annotation1
Metal bindingi195Calcium 1UniRule annotation1
Metal bindingi203Calcium 2UniRule annotation1
Active sitei232NucleophileUniRule annotation1
Metal bindingi236Calcium 1; via carbonyl oxygenUniRule annotation1
Active sitei262Proton donorUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciSTER526218:GHLD-3231-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Sterm_3249Imported
OrganismiSebaldella termitidis (strain ATCC 33386 / NCTC 11300)Imported
Taxonomic identifieri526218 [NCBI]
Taxonomic lineageiBacteriaFusobacteriaFusobacterialesLeptotrichiaceaeSebaldella
Proteomesi
  • UP000000845 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi526218.Sterm_3249.

Structurei

3D structure databases

ProteinModelPortaliD1APQ6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 388AamyInterPro annotationAdd BLAST385

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000094847.
KOiK01176.
OMAiTCIGWVR.
OrthoDBiPOG091H0HQ3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiView protein in InterPro
IPR013776. A-amylase_thermo.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 1 hit.
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

D1APQ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENGVMFQYF EWNLPADKKH WKRLADDAEH LREIGINAVW IPPAIKGTSD
60 70 80 90 100
LDVGYGAYDL YDLGEFDQKG TIPTKYGTKE ELKAAIEELH KYEISVYLDA
110 120 130 140 150
VMNHKAGADE TEKFLAQEVD PNDRNKPVSD PYEIEGWTKF NFEGRNNKYS
160 170 180 190 200
DFKWHWYHFN GTDFNNLNQK NAIYRIMGEG KSWDENVDDE NGNYDYLMFA
210 220 230 240 250
NIDYDHPEVV DEMNKWGIWV ADELNLDGFR LDAIKHINSN FIEGFLKEVR
260 270 280 290 300
KVKGDKFYAV GEYWKDDLDS IQEYLNNVDY EVELFDVPLH YNFFTASKEG
310 320 330 340 350
EAYDLRNIFE NSIVTNNKLF SVTFVDNHDS QWGSALESQV ESWFKPLAYA
360 370 380 390 400
IILLIADGYP CIFYGDYYSL GDKESPHRWM IDKLLYTRKH YAYGEQINYF
410 420 430 440 450
DDPNLIGIVR KGAEEHPDSG LVMILSNHTE GSKKINIGKE HAGETWFEIT
460 470 480
ENIKDEIQID ENGEAEFRVN AGNVAVWVKK
Length:480
Mass (Da):55,889
Last modified:January 19, 2010 - v1
Checksum:iA9EFFEB176959A32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001739 Genomic DNA. Translation: ACZ10090.1.
RefSeqiWP_012862672.1. NC_013517.1.

Genome annotation databases

EnsemblBacteriaiACZ10090; ACZ10090; Sterm_3249.
KEGGistr:Sterm_3249.
PATRICi32410512. VBISebTer81212_3294.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001739 Genomic DNA. Translation: ACZ10090.1.
RefSeqiWP_012862672.1. NC_013517.1.

3D structure databases

ProteinModelPortaliD1APQ6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi526218.Sterm_3249.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACZ10090; ACZ10090; Sterm_3249.
KEGGistr:Sterm_3249.
PATRICi32410512. VBISebTer81212_3294.

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000094847.
KOiK01176.
OMAiTCIGWVR.
OrthoDBiPOG091H0HQ3.

Enzyme and pathway databases

BioCyciSTER526218:GHLD-3231-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiView protein in InterPro
IPR013776. A-amylase_thermo.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 1 hit.
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD1APQ6_SEBTE
AccessioniPrimary (citable) accession number: D1APQ6
Entry historyiIntegrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: February 15, 2017
This is version 47 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.