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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Sterm_3249

Organism
Sebaldella termitidis (strain ATCC 33386 / NCTC 11300)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei232 – 2321NucleophileUniRule annotation
Active sitei262 – 2621Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciSTER526218:GHLD-3278-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Sterm_3249Imported
OrganismiSebaldella termitidis (strain ATCC 33386 / NCTC 11300)Imported
Taxonomic identifieri526218 [NCBI]
Taxonomic lineageiBacteriaFusobacteriaFusobacterialesLeptotrichiaceaeSebaldella
ProteomesiUP000000845 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD1APQ6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000094847.
KOiK01176.
OMAiLACSARN.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

D1APQ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENGVMFQYF EWNLPADKKH WKRLADDAEH LREIGINAVW IPPAIKGTSD
60 70 80 90 100
LDVGYGAYDL YDLGEFDQKG TIPTKYGTKE ELKAAIEELH KYEISVYLDA
110 120 130 140 150
VMNHKAGADE TEKFLAQEVD PNDRNKPVSD PYEIEGWTKF NFEGRNNKYS
160 170 180 190 200
DFKWHWYHFN GTDFNNLNQK NAIYRIMGEG KSWDENVDDE NGNYDYLMFA
210 220 230 240 250
NIDYDHPEVV DEMNKWGIWV ADELNLDGFR LDAIKHINSN FIEGFLKEVR
260 270 280 290 300
KVKGDKFYAV GEYWKDDLDS IQEYLNNVDY EVELFDVPLH YNFFTASKEG
310 320 330 340 350
EAYDLRNIFE NSIVTNNKLF SVTFVDNHDS QWGSALESQV ESWFKPLAYA
360 370 380 390 400
IILLIADGYP CIFYGDYYSL GDKESPHRWM IDKLLYTRKH YAYGEQINYF
410 420 430 440 450
DDPNLIGIVR KGAEEHPDSG LVMILSNHTE GSKKINIGKE HAGETWFEIT
460 470 480
ENIKDEIQID ENGEAEFRVN AGNVAVWVKK
Length:480
Mass (Da):55,889
Last modified:January 19, 2010 - v1
Checksum:iA9EFFEB176959A32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001739 Genomic DNA. Translation: ACZ10090.1.
RefSeqiWP_012862672.1. NC_013517.1.
YP_003310021.1. NC_013517.1.

Genome annotation databases

EnsemblBacteriaiACZ10090; ACZ10090; Sterm_3249.
KEGGistr:Sterm_3249.
PATRICi32410512. VBISebTer81212_3294.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001739 Genomic DNA. Translation: ACZ10090.1.
RefSeqiWP_012862672.1. NC_013517.1.
YP_003310021.1. NC_013517.1.

3D structure databases

ProteinModelPortaliD1APQ6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACZ10090; ACZ10090; Sterm_3249.
KEGGistr:Sterm_3249.
PATRICi32410512. VBISebTer81212_3294.

Phylogenomic databases

HOGENOMiHOG000094847.
KOiK01176.
OMAiLACSARN.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciSTER526218:GHLD-3278-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33386 / NCTC 11300Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33386 / NCTC 11300Imported.

Entry informationi

Entry nameiD1APQ6_SEBTE
AccessioniPrimary (citable) accession number: D1APQ6
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: April 29, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.