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Protein

Phosphopentomutase

Gene

deoB

Organism
Sebaldella termitidis (strain ATCC 33386 / NCTC 11300)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotationSAAS annotation

Catalytic activityi

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotationSAAS annotation
Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotationSAAS annotation

Cofactori

Protein has several cofactor binding sites:
  • Mn2+UniRule annotationSAAS annotationNote: Binds 1 or 2 manganese ions.UniRule annotationSAAS annotation
  • Mn2+Note: Binds 1 or 2 manganese ions.

Pathway: 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II).UniRule annotationSAAS annotation
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. Phosphopentomutase (deoB)
  2. no protein annotated in this organism
  3. no protein annotated in this organism
This subpathway is part of the pathway 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis, which is itself part of Metabolic intermediate biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II), the pathway 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis and in Metabolic intermediate biosynthesis.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi13 – 131ManganeseUniRule annotation
Metal bindingi292 – 2921ManganeseUniRule annotation
Metal bindingi328 – 3281ManganeseUniRule annotation
Metal bindingi329 – 3291ManganeseUniRule annotation
Metal bindingi340 – 3401ManganeseUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Ligandi

ManganeseUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciSTER526218:GHLD-1801-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
PhosphopentomutaseUniRule annotationSAAS annotation (EC:5.4.2.7UniRule annotationSAAS annotation)
Alternative name(s):
PhosphodeoxyribomutaseUniRule annotation
Gene namesi
Name:deoBUniRule annotation
Ordered Locus Names:Sterm_1791Imported
OrganismiSebaldella termitidis (strain ATCC 33386 / NCTC 11300)Imported
Taxonomic identifieri526218 [NCBI]
Taxonomic lineageiBacteriaFusobacteriaFusobacterialesLeptotrichiaceaeSebaldella
ProteomesiUP000000845 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi526218.Sterm_1791.

Structurei

3D structure databases

ProteinModelPortaliD1AIR5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the phosphopentomutase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000008159.
KOiK01839.
OMAiYLGNCHA.
OrthoDBiEOG6R5C7J.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

D1AIR5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKINRVTLI VLDSVGAGEL PDAKDFGDEG SNTLGNLSKA TGGLNLPNMQ
60 70 80 90 100
KIGLGNITDI TGVAPNNNPD GAYGKAKEVS IGKDTTTGHW EMSGVILERP
110 120 130 140 150
FPNYMKGFSE EVIKEFSEKT GRGVLWNKAA SGTVVIEDCG EEQMKTGKWI
160 170 180 190 200
VYSSADPVFQ IAANEEIIPL EELYKACEIA LEICNAKSPV SRVIARPFVG
210 220 230 240 250
KKKGEFKRTS NRHDFSIQPP GVTVLDKLSE AGKDVIGIGK IYDIFAGRGI
260 270 280 290 300
TDTRKTNKDD LDGIKKTIEA LKEDTNGLIF TNLVDFDMLY GHRRDTEGYK
310 320 330 340 350
NALELFDKWL PEIEKNLRDD EILIITADHG NDPTYKGTDH TREYIPVLVY
360 370 380 390
GKHVKKGADI GTRESFTDIA STIEELLLGN KTEGSFADII LD
Length:392
Mass (Da):43,051
Last modified:January 19, 2010 - v1
Checksum:i148CEF7BB895E15A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001739 Genomic DNA. Translation: ACZ08649.1.
RefSeqiWP_012861243.1. NC_013517.1.
YP_003308580.1. NC_013517.1.

Genome annotation databases

EnsemblBacteriaiACZ08649; ACZ08649; Sterm_1791.
KEGGistr:Sterm_1791.
PATRICi32407542. VBISebTer81212_1826.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001739 Genomic DNA. Translation: ACZ08649.1.
RefSeqiWP_012861243.1. NC_013517.1.
YP_003308580.1. NC_013517.1.

3D structure databases

ProteinModelPortaliD1AIR5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi526218.Sterm_1791.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACZ08649; ACZ08649; Sterm_1791.
KEGGistr:Sterm_1791.
PATRICi32407542. VBISebTer81212_1826.

Phylogenomic databases

HOGENOMiHOG000008159.
KOiK01839.
OMAiYLGNCHA.
OrthoDBiEOG6R5C7J.

Enzyme and pathway databases

UniPathwayiUPA00087; UER00173.
BioCyciSTER526218:GHLD-1801-MONOMER.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33386 / NCTC 11300Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33386 / NCTC 11300Imported.

Entry informationi

Entry nameiD1AIR5_SEBTE
AccessioniPrimary (citable) accession number: D1AIR5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: June 24, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.