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D1AIR5 (D1AIR5_SEBTE) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phosphopentomutase HAMAP-Rule MF_00740
EC=5.4.2.7 HAMAP-Rule MF_00740
Alternative name(s):
Phosphodeoxyribomutase HAMAP-Rule MF_00740
Gene names
Name:deoB HAMAP-Rule MF_00740
Ordered Locus Names:Sterm_1791 EMBL ACZ08649.1
OrganismSebaldella termitidis (strain ATCC 33386 / NCTC 11300) [Complete proteome] [HAMAP] EMBL ACZ08649.1
Taxonomic identifier526218 [NCBI]
Taxonomic lineageBacteria › Fusobacteria › Fusobacteriales › Leptotrichiaceae › Sebaldella ›

Protein attributes

Sequence length392 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity. HAMAP-Rule MF_00740 SAAS SAAS024052

Catalytic activity

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate. HAMAP-Rule MF_00740 SAAS SAAS024052

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate. HAMAP-Rule MF_00740 SAAS SAAS024052

Cofactor

Binds 1 or 2 manganese ions By similarity. HAMAP-Rule MF_00740 SAAS SAAS024052

Pathway

Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. HAMAP-Rule MF_00740 SAAS SAAS024052

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00740 SAAS SAAS024052.

Sequence similarities

Belongs to the phosphopentomutase family. HAMAP-Rule MF_00740

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding131Manganese By similarity HAMAP-Rule MF_00740
Metal binding2921Manganese By similarity HAMAP-Rule MF_00740
Metal binding3281Manganese By similarity HAMAP-Rule MF_00740
Metal binding3291Manganese By similarity HAMAP-Rule MF_00740
Metal binding3401Manganese By similarity HAMAP-Rule MF_00740

Sequences

Sequence LengthMass (Da)Tools
D1AIR5 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 148CEF7BB895E15A

FASTA39243,051
        10         20         30         40         50         60 
MSKINRVTLI VLDSVGAGEL PDAKDFGDEG SNTLGNLSKA TGGLNLPNMQ KIGLGNITDI 

        70         80         90        100        110        120 
TGVAPNNNPD GAYGKAKEVS IGKDTTTGHW EMSGVILERP FPNYMKGFSE EVIKEFSEKT 

       130        140        150        160        170        180 
GRGVLWNKAA SGTVVIEDCG EEQMKTGKWI VYSSADPVFQ IAANEEIIPL EELYKACEIA 

       190        200        210        220        230        240 
LEICNAKSPV SRVIARPFVG KKKGEFKRTS NRHDFSIQPP GVTVLDKLSE AGKDVIGIGK 

       250        260        270        280        290        300 
IYDIFAGRGI TDTRKTNKDD LDGIKKTIEA LKEDTNGLIF TNLVDFDMLY GHRRDTEGYK 

       310        320        330        340        350        360 
NALELFDKWL PEIEKNLRDD EILIITADHG NDPTYKGTDH TREYIPVLVY GKHVKKGADI 

       370        380        390 
GTRESFTDIA STIEELLLGN KTEGSFADII LD

« Hide

References

[1]"The complete chromosome of Sebaldella termitidis ATCC 33386."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Sims D., Meincke L., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33386 / NCTC 11300.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001739 Genomic DNA. Translation: ACZ08649.1.
RefSeqYP_003308580.1. NC_013517.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACZ08649; ACZ08649; Sterm_1791.
GeneID8597260.
KEGGstr:Sterm_1791.
PATRIC32407542. VBISebTer81212_1826.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000008159.
KOK01839.
OMAPNMAKLG.

Enzyme and pathway databases

UniPathwayUPA00087; UER00173.

Family and domain databases

Gene3D3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPMF_00740. Phosphopentomut.
InterProIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFPIRSF001491. Ppentomutase. 1 hit.
SUPFAMSSF53649. Alkaline_phosphatase_core. 1 hit.
SSF143856. SSF143856. 1 hit.
TIGRFAMsTIGR01696. deoB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD1AIR5_SEBTE
AccessionPrimary (citable) accession number: D1AIR5
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info