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D1AIR5

- D1AIR5_SEBTE

UniProt

D1AIR5 - D1AIR5_SEBTE

Protein

Phosphopentomutase

Gene

deoB

Organism
Sebaldella termitidis (strain ATCC 33386 / NCTC 11300)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (19 Jan 2010)
      Previous versions | rss
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    Functioni

    Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotationSAAS annotation

    Catalytic activityi

    2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotationSAAS annotation
    Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotationSAAS annotation

    Cofactori

    Binds 1 or 2 manganese ions.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi13 – 131ManganeseUniRule annotation
    Metal bindingi292 – 2921ManganeseUniRule annotation
    Metal bindingi328 – 3281ManganeseUniRule annotation
    Metal bindingi329 – 3291ManganeseUniRule annotation
    Metal bindingi340 – 3401ManganeseUniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. manganese ion binding Source: UniProtKB-HAMAP
    3. phosphopentomutase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
    2. cellular metabolic compound salvage Source: InterPro
    3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Ligandi

    ManganeseUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciSTER526218:GHLD-1801-MONOMER.
    UniPathwayiUPA00087; UER00173.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
    Alternative name(s):
    PhosphodeoxyribomutaseUniRule annotation
    Gene namesi
    Name:deoBUniRule annotation
    Ordered Locus Names:Sterm_1791Imported
    OrganismiSebaldella termitidis (strain ATCC 33386 / NCTC 11300)Imported
    Taxonomic identifieri526218 [NCBI]
    Taxonomic lineageiBacteriaFusobacteriaFusobacterialesLeptotrichiaceaeSebaldella
    ProteomesiUP000000845: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliD1AIR5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the phosphopentomutase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000008159.
    KOiK01839.
    OMAiEHTREHI.
    OrthoDBiEOG6R5C7J.

    Family and domain databases

    Gene3Di3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPiMF_00740. Phosphopentomut.
    InterProiIPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view]
    PfamiPF01676. Metalloenzyme. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001491. Ppentomutase. 1 hit.
    SUPFAMiSSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsiTIGR01696. deoB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D1AIR5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKINRVTLI VLDSVGAGEL PDAKDFGDEG SNTLGNLSKA TGGLNLPNMQ    50
    KIGLGNITDI TGVAPNNNPD GAYGKAKEVS IGKDTTTGHW EMSGVILERP 100
    FPNYMKGFSE EVIKEFSEKT GRGVLWNKAA SGTVVIEDCG EEQMKTGKWI 150
    VYSSADPVFQ IAANEEIIPL EELYKACEIA LEICNAKSPV SRVIARPFVG 200
    KKKGEFKRTS NRHDFSIQPP GVTVLDKLSE AGKDVIGIGK IYDIFAGRGI 250
    TDTRKTNKDD LDGIKKTIEA LKEDTNGLIF TNLVDFDMLY GHRRDTEGYK 300
    NALELFDKWL PEIEKNLRDD EILIITADHG NDPTYKGTDH TREYIPVLVY 350
    GKHVKKGADI GTRESFTDIA STIEELLLGN KTEGSFADII LD 392
    Length:392
    Mass (Da):43,051
    Last modified:January 19, 2010 - v1
    Checksum:i148CEF7BB895E15A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001739 Genomic DNA. Translation: ACZ08649.1.
    RefSeqiYP_003308580.1. NC_013517.1.

    Genome annotation databases

    EnsemblBacteriaiACZ08649; ACZ08649; Sterm_1791.
    GeneIDi8597260.
    KEGGistr:Sterm_1791.
    PATRICi32407542. VBISebTer81212_1826.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001739 Genomic DNA. Translation: ACZ08649.1 .
    RefSeqi YP_003308580.1. NC_013517.1.

    3D structure databases

    ProteinModelPortali D1AIR5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACZ08649 ; ACZ08649 ; Sterm_1791 .
    GeneIDi 8597260.
    KEGGi str:Sterm_1791.
    PATRICi 32407542. VBISebTer81212_1826.

    Phylogenomic databases

    HOGENOMi HOG000008159.
    KOi K01839.
    OMAi EHTREHI.
    OrthoDBi EOG6R5C7J.

    Enzyme and pathway databases

    UniPathwayi UPA00087 ; UER00173 .
    BioCyci STER526218:GHLD-1801-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPi MF_00740. Phosphopentomut.
    InterProi IPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view ]
    Pfami PF01676. Metalloenzyme. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001491. Ppentomutase. 1 hit.
    SUPFAMi SSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsi TIGR01696. deoB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33386 / NCTC 11300Imported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33386 / NCTC 11300Imported.

    Entry informationi

    Entry nameiD1AIR5_SEBTE
    AccessioniPrimary (citable) accession number: D1AIR5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 19, 2010
    Last sequence update: January 19, 2010
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3