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D1AFW9 (D1AFW9_SEBTE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histidine--tRNA ligase HAMAP-Rule MF_00127

EC=6.1.1.21 HAMAP-Rule MF_00127
Alternative name(s):
Histidyl-tRNA synthetase HAMAP-Rule MF_00127
Gene names
Name:hisS HAMAP-Rule MF_00127
Ordered Locus Names:Sterm_1136 EMBL ACZ08004.1
OrganismSebaldella termitidis (strain ATCC 33386 / NCTC 11300) [Complete proteome] [HAMAP] EMBL ACZ08004.1
Taxonomic identifier526218 [NCBI]
Taxonomic lineageBacteriaFusobacteriaFusobacterialesLeptotrichiaceaeSebaldella

Protein attributes

Sequence length414 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His). HAMAP-Rule MF_00127 SAAS SAAS015807

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00127

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00127 SAAS SAAS015807.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. HAMAP-Rule MF_00127

Sequences

Sequence LengthMass (Da)Tools
D1AFW9 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 10B8BF337ACA602B

FASTA41447,867
        10         20         30         40         50         60 
MIKVLKGMKD RYFEDIRKYD YIIDSAKNVF SKYGFEKIIT PIVEETELFE RGVGEETDVV 

        70         80         90        100        110        120 
SKEMYTFLDK AGRSITMRPE GTAGVVRAYL QAGLYKSDPL VKWFYYGPMY RYEAPQKGRY 

       130        140        150        160        170        180 
REFHQVGVEA FGVRDPFADA EIIKMGCEFL ETAGIKNLTV EINSLGNSSS RQRYTAELKK 

       190        200        210        220        230        240 
FIEERLDKLC DNCKTRYKKN PLRVLDCKSE ACQEQYKNAP VLKDYLDEES STYYEELKKY 

       250        260        270        280        290        300 
LELLEVNYVE NYRLVRGLDY YSDTVFEIKS ENLGAQSTVL AGGRYDKLLE ILGDIQMPGI 

       310        320        330        340        350        360 
GFAAGTERIA LLMDESLLKE EEKPVYVVYF PETKEYALNI IKILRENGIK VDFDYGMKSF 

       370        380        390        400        410 
KSQMKKAGKL NSKYVIILGE DEKNENKAVL KNFDTGEQEK LEIEKVIERV NGDV 

« Hide

References

[1]"The complete chromosome of Sebaldella termitidis ATCC 33386."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Sims D., Meincke L., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.F., Hugenholtz P., Woyke T., Wu D., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33386 / NCTC 11300.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001739 Genomic DNA. Translation: ACZ08004.1.
RefSeqYP_003307935.1. NC_013517.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACZ08004; ACZ08004; Sterm_1136.
GeneID8596615.
KEGGstr:Sterm_1136.
PATRIC32406234. VBISebTer81212_1172.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000018072.
KOK01892.
OMAFENCFRY.
OrthoDBEOG6BPDH4.

Enzyme and pathway databases

BioCycSTER526218:GHLD-1145-MONOMER.

Family and domain databases

Gene3D3.40.50.800. 1 hit.
HAMAPMF_00127. His_tRNA_synth.
InterProIPR006195. aa-tRNA-synth_II.
IPR004154. Anticodon-bd.
IPR015807. His-tRNA-ligase.
IPR004516. HisRS/HisZ.
[Graphical view]
PANTHERPTHR11476. PTHR11476. 1 hit.
PfamPF03129. HGTP_anticodon. 1 hit.
[Graphical view]
PIRSFPIRSF001549. His-tRNA_synth. 1 hit.
SUPFAMSSF52954. SSF52954. 1 hit.
TIGRFAMsTIGR00442. hisS. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD1AFW9_SEBTE
AccessionPrimary (citable) accession number: D1AFW9
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: February 19, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)