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D0ZIK3 (D0ZIK3_SALT1) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length179 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs By similarity. HAMAP-Rule MF_01333

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome By similarity. HAMAP-Rule MF_01333

Sequence similarities

Belongs to the ribosomal protein L5P family. HAMAP-Rule MF_01333 RuleBase RU003930

Sequences

Sequence LengthMass (Da)Tools
D0ZIK3 [UniParc].

Last modified January 19, 2010. Version 1.
Checksum: 9A016B9AF0EA8094

FASTA17920,318
        10         20         30         40         50         60 
MAKLHDYYKD EVVNKLMTEF NYNSVMQVPR VEKITLNMGV GEAIADKKLL DNAAADLTAI 

        70         80         90        100        110        120 
SGQKPLITKA RKSVAGFKIR QGYPIGCKVT LRGERMWEFF ERLITIAVPR IRDFRGLSAK 

       130        140        150        160        170 
SFDGRGNYSM GVREQIIFPE IDYDKVDRVR GLDITITTTA KSDEEGRALL AAFDFPFRK

« Hide

References

[1]"Short-term Signatures of Evolutionary Change in the Salmonella enterica serovar Typhimurium 14028 Genome."
Jarvik T., Smillie C., Groisman E.A., Ochman H.
J. Bacteriol. 192:560-567(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 14028s / SGSC 2262.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001363 Genomic DNA. Translation: ACY90522.1.
RefSeqYP_005239618.1. NC_016856.1.

3D structure databases

ProteinModelPortalD0ZIK3.
SMRD0ZIK3. Positions 2-179.
ModBaseSearch...

Proteomic databases

PRIDED0ZIK3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY90522; ACY90522; STM14_4131.
GeneID11758558.
KEGGseo:STM14_4131.
PATRIC36738711. VBISalEnt101322_3782.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02931.

Enzyme and pathway databases

BioCycSENT588858:GJDZ-4135-MONOMER.

Family and domain databases

Gene3D3.30.1440.10. 1 hit.
HAMAPMF_01333_B. Ribosomal_L5_B.
InterProIPR002132. Ribosomal_L5.
IPR020930. Ribosomal_L5_bac-type.
IPR020929. Ribosomal_L5_CS.
IPR022803. Ribosomal_L5_domain.
[Graphical view]
PANTHERPTHR11994. PTHR11994. 1 hit.
PfamPF00281. Ribosomal_L5. 1 hit.
PF00673. Ribosomal_L5_C. 1 hit.
[Graphical view]
PIRSFPIRSF002161. Ribosomal_L5. 1 hit.
SUPFAMSSF55282. Ribosomal_L5. 1 hit.
PROSITEPS00358. RIBOSOMAL_L5. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0ZIK3_SALT1
AccessionPrimary (citable) accession number: D0ZIK3
Entry history
Integrated into UniProtKB/TrEMBL: January 19, 2010
Last sequence update: January 19, 2010
Last modified: May 29, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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