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D0R4Z0 (D0R4Z0_LACJF) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=2.6.1.- EMBL CAX67153.1
Gene names
Name:patB EMBL CAX67153.1
Ordered Locus Names:FI9785_1293 EMBL CAX67153.1
OrganismLactobacillus johnsonii (strain FI9785) [Complete proteome] [HAMAP] EMBL CAX67153.1
Taxonomic identifier633699 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus

Protein attributes

Sequence length388 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionAminotransferase EMBL CAX67153.1
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processbiosynthetic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionpyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

transaminase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D0R4Z0 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: 9024CD2B67721C1D

FASTA38843,900
        10         20         30         40         50         60 
MKYDFKTVVN RRHTDSVKWN VKDNELPMSI ADMDFKTAPE IILAIKEKIK LGAFGYEEPG 

        70         80         90        100        110        120 
KDYFNSVSNW YELEHGAKAE PNWMIFATGV VPAISSIVRR VSHIGDNVLV QEPVYNIFYN 

       130        140        150        160        170        180 
SIENNGRHVL SNDLIYSNGK YEINWQDLEE KLANPLTTLM VFCNPHNPPG IVWKKREVER 

       190        200        210        220        230        240 
IASLCQENNV ILLSDEIHGD LVRNNVKYTP AFSVAKILRS NVISLVSPSK TFNVASLHAA 

       250        260        270        280        290        300 
TVIIPDNNLR DIINRGLNID ELAEPNLLAI PATIAAYTEG FNWLHELLAV IDNNFAYVEK 

       310        320        330        340        350        360 
KITSQLENVK IFSGPATYLM WLDVSKITHD SYKLAAYLRK ETGLIVSAGS IYRRNGNEFL 

       370        380 
RINLASPKSM VEDGISRLII GIKKYSKK 

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References

[1]"Complete genome sequence of Lactobacillus johnsonii FI9785, a competitive exclusion agent against pathogens in poultry."
Wegmann U., Overweg K., Horn N., Goesmann A., Narbad A., Gasson M.J., Shearman C.
J. Bacteriol. 191:7142-7143(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: FI9785 EMBL CAX67153.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN298497 Genomic DNA. Translation: CAX67153.1.
RefSeqYP_003293420.1. NC_013504.1.

3D structure databases

ProteinModelPortalD0R4Z0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING633699.FI9785_1293.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAX67153; CAX67153; FI9785_1293.
GeneID8571019.
KEGGljf:FI9785_1293.
PATRIC32247183. VBILacJoh137736_1220.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1168.
HOGENOMHOG000223048.
KOK14155.
OrthoDBEOG6D8BBF.

Enzyme and pathway databases

BioCycLJOH633699:GJ95-1224-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004839. Aminotransferase_I/II.
IPR027619. C_S_lyase_PatB.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR04350. C_S_lyase_PatB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD0R4Z0_LACJF
AccessionPrimary (citable) accession number: D0R4Z0
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: November 13, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)