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Protein
Submitted name:

PatB protein

Gene

patB

Organism
Lactobacillus johnsonii (strain FI9785)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Enzyme and pathway databases

BioCyciLJOH633699:GJ95-1224-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
PatB proteinImported (EC:2.6.1.-Imported)
Gene namesi
Name:patBImported
Ordered Locus Names:FI9785_1293Imported
OrganismiLactobacillus johnsonii (strain FI9785)Imported
Taxonomic identifieri633699 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus
ProteomesiUP000002627 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD0R4Z0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1168.
HOGENOMiHOG000223048.
KOiK14155.
OrthoDBiEOG6D8BBF.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR027619. C_S_lyase_PatB.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR04350. C_S_lyase_PatB. 1 hit.

Sequencei

Sequence statusi: Complete.

D0R4Z0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYDFKTVVN RRHTDSVKWN VKDNELPMSI ADMDFKTAPE IILAIKEKIK
60 70 80 90 100
LGAFGYEEPG KDYFNSVSNW YELEHGAKAE PNWMIFATGV VPAISSIVRR
110 120 130 140 150
VSHIGDNVLV QEPVYNIFYN SIENNGRHVL SNDLIYSNGK YEINWQDLEE
160 170 180 190 200
KLANPLTTLM VFCNPHNPPG IVWKKREVER IASLCQENNV ILLSDEIHGD
210 220 230 240 250
LVRNNVKYTP AFSVAKILRS NVISLVSPSK TFNVASLHAA TVIIPDNNLR
260 270 280 290 300
DIINRGLNID ELAEPNLLAI PATIAAYTEG FNWLHELLAV IDNNFAYVEK
310 320 330 340 350
KITSQLENVK IFSGPATYLM WLDVSKITHD SYKLAAYLRK ETGLIVSAGS
360 370 380
IYRRNGNEFL RINLASPKSM VEDGISRLII GIKKYSKK
Length:388
Mass (Da):43,900
Last modified:December 15, 2009 - v1
Checksum:i9024CD2B67721C1D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN298497 Genomic DNA. Translation: CAX67153.1.
RefSeqiWP_012846404.1. NC_013504.1.
YP_003293420.1. NC_013504.1.

Genome annotation databases

EnsemblBacteriaiCAX67153; CAX67153; FI9785_1293.
KEGGiljf:FI9785_1293.
PATRICi32247183. VBILacJoh137736_1220.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN298497 Genomic DNA. Translation: CAX67153.1.
RefSeqiWP_012846404.1. NC_013504.1.
YP_003293420.1. NC_013504.1.

3D structure databases

ProteinModelPortaliD0R4Z0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAX67153; CAX67153; FI9785_1293.
KEGGiljf:FI9785_1293.
PATRICi32247183. VBILacJoh137736_1220.

Phylogenomic databases

eggNOGiCOG1168.
HOGENOMiHOG000223048.
KOiK14155.
OrthoDBiEOG6D8BBF.

Enzyme and pathway databases

BioCyciLJOH633699:GJ95-1224-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR027619. C_S_lyase_PatB.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR04350. C_S_lyase_PatB. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Lactobacillus johnsonii FI9785, a competitive exclusion agent against pathogens in poultry."
    Wegmann U., Overweg K., Horn N., Goesmann A., Narbad A., Gasson M.J., Shearman C.
    J. Bacteriol. 191:7142-7143(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FI9785Imported.

Entry informationi

Entry nameiD0R4Z0_LACJF
AccessioniPrimary (citable) accession number: D0R4Z0
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: June 24, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.