Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D0NB14

- D0NB14_PHYIT

UniProt

D0NB14 - D0NB14_PHYIT

Protein
Submitted name:

Putative uncharacterized protein

Gene

PITG_08606

Organism
Phytophthora infestans (strain T30-4) (Potato late blight fungus)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 27 (01 Oct 2014)
      Sequence version 1 (15 Dec 2009)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. zinc ion binding Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    ORF Names:PITG_08606Imported
    OrganismiPhytophthora infestans (strain T30-4) (Potato late blight fungus)Imported
    Taxonomic identifieri403677 [NCBI]
    Taxonomic lineageiEukaryotaStramenopilesOomycetesPeronosporalesPhytophthora
    ProteomesiUP000006643: Partially assembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliD0NB14.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000183997.
    KOiK01971.
    OMAiPTNARTC.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProiIPR001357. BRCT_dom.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    IPR007527. Znf_SWIM.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    PF12738. PTCB-BRCT. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    PS50966. ZF_SWIM. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D0NB14-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSIVVFTGTL CQPRKEATAE AEQYGYVVGA RLTKTSSFLI CGAKVGAKKM    50
    EEAEKLGVAT LTELEWREKL AATGSVDACS GSEAEVKGFR VQPRMTKATT 100
    FLVCGDKAGQ KLKEAEKLGV TVLTEEPSKK RTVAYDEVTG AVNGIKPKQL 150
    LVDGTFHDVK SASGSTYIVK RIGMVYSCSC PAWRNQRHPP TSRTCKHLKQ 200
    LLGEEFETMR ARGSATAPRG TASAGGGSSR AVAKTTAPKV LLAMKWEREK 250
    DDPVGWWISE KLDGVRAFWD SSKKIFLSRL GYEYPAPSWF TAGFPDDVDL 300
    DGELFGGRGA FQFTVGIAKT QGSKHWEKLV YKVFDAPSLK TQKFEERMEH 350
    AKDVVTKASS KYIEWVEHTM CKSLEHLDEV FNEIEKLGGE GLMIREPGSK 400
    YAQGRSSSLL KIKRFHDGEA EVLAYEDGKG KYVGMVGALR CRMSSGKMFK 450
    VASGLSDQQR DKPPAIGSII VYKCQELTND GNPRFPVFVG IAADKTRPKD 500
    PVIANAMGQE 510
    Length:510
    Mass (Da):55,991
    Last modified:December 15, 2009 - v1
    Checksum:iD320555140B297C7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS028130 Genomic DNA. Translation: EEY55022.1.
    RefSeqiXP_002903967.1. XM_002903921.1.

    Genome annotation databases

    EnsemblProtistsiPITG_08606T0; PITG_08606T0; PITG_08606.
    GeneIDi9462030.
    KEGGipif:PITG_08606.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS028130 Genomic DNA. Translation: EEY55022.1 .
    RefSeqi XP_002903967.1. XM_002903921.1.

    3D structure databases

    ProteinModelPortali D0NB14.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi PITG_08606T0 ; PITG_08606T0 ; PITG_08606 .
    GeneIDi 9462030.
    KEGGi pif:PITG_08606.

    Phylogenomic databases

    HOGENOMi HOG000183997.
    KOi K01971.
    OMAi PTNARTC.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProi IPR001357. BRCT_dom.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    IPR007527. Znf_SWIM.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    PF12738. PTCB-BRCT. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    PS50966. ZF_SWIM. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans."
      The Broad Institute Genome Sequencing Platform
      Haas B.J., Kamoun S., Zody M.C., Jiang R.H., Handsaker R.E., Cano L.M., Grabherr M., Kodira C.D., Raffaele S., Torto-Alalibo T., Bozkurt T.O., Ah-Fong A.M., Alvarado L., Anderson V.L., Armstrong M.R., Avrova A., Baxter L., Beynon J.
      , Boevink P.C., Bollmann S.R., Bos J.I., Bulone V., Cai G., Cakir C., Carrington J.C., Chawner M., Conti L., Costanzo S., Ewan R., Fahlgren N., Fischbach M.A., Fugelstad J., Gilroy E.M., Gnerre S., Green P.J., Grenville-Briggs L.J., Griffith J., Grunwald N.J., Horn K., Horner N.R., Hu C.H., Huitema E., Jeong D.H., Jones A.M., Jones J.D., Jones R.W., Karlsson E.K., Kunjeti S.G., Lamour K., Liu Z., Ma L., Maclean D., Chibucos M.C., McDonald H., McWalters J., Meijer H.J., Morgan W., Morris P.F., Munro C.A., O'Neill K., Ospina-Giraldo M., Pinzon A., Pritchard L., Ramsahoye B., Ren Q., Restrepo S., Roy S., Sadanandom A., Savidor A., Schornack S., Schwartz D.C., Schumann U.D., Schwessinger B., Seyer L., Sharpe T., Silvar C., Song J., Studholme D.J., Sykes S., Thines M., van de Vondervoort P.J., Phuntumart V., Wawra S., Weide R., Win J., Young C., Zhou S., Fry W., Meyers B.C., van West P., Ristaino J., Govers F., Birch P.R., Whisson S.C., Judelson H.S., Nusbaum C.
      Nature 461:393-398(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: T30-4Imported.

    Entry informationi

    Entry nameiD0NB14_PHYIT
    AccessioniPrimary (citable) accession number: D0NB14
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 15, 2009
    Last sequence update: December 15, 2009
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3