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D0N315

- D0N315_PHYIT

UniProt

D0N315 - D0N315_PHYIT

Protein

Alpha-amylase

Gene

PITG_05526

Organism
Phytophthora infestans (strain T30-4) (Potato late blight fungus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (15 Dec 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro
    3. starch binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    ORF Names:PITG_05526Imported
    OrganismiPhytophthora infestans (strain T30-4) (Potato late blight fungus)Imported
    Taxonomic identifieri403677 [NCBI]
    Taxonomic lineageiEukaryotaStramenopilesOomycetesPeronosporalesPhytophthora
    ProteomesiUP000006643: Partially assembled WGS sequence

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000182360.
    KOiK01176.
    OMAiSSDYPKE.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR006046. Alpha_amylase.
    IPR005085. CBM_fam25.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF03423. CBM_25. 1 hit.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D0N315-1 [UniParc]FASTAAdd to Basket

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    MSASTSSEYP ASAGWFQYTL PAPQASLEFV FNNGNGVWDN NNNANYKATS    50
    AGRWIVMSSV SVPAATKTST PAPTTTPSPS SPASPTPTST RAPTPTTPAP 100
    TPSGSCYNYN GIDSCSSSTQ TELPAADDQR KWQTPPRNAS GWSAEYQDYR 150
    SLTGYAHVVY GSSRTSATVT VRTYLRVASA SCSYTFNGVK STSPTYQVTN 200
    SLKDDLVIVA TCTDGDESWK LELDPVNFVW QNNAVNQPSG MKGGQKGAIV 250
    DLFGWPYNDI AQECTDFLGK AGYMGVKINP PQESVLTDAW PQSGQRNPWY 300
    FVYQPVSYRL YSRLGTRKQL RTMIQTCRAN GVRVYADAVV NHMSGGGNDV 350
    LSHRYSSGGS CVTWGAKSSS KKSPYYTHSF TYGVNAYTNA HPALEFPAVP 400
    FGPTDFHCER SMSSWTDPLQ LETGWLSGLT DLNTETTYVR ERIAQYFVDL 450
    LGIGFSGLRL DALKHIGPVD TGAIFGLLRK YMGGSSPDDF ISWGEVILGG 500
    EASLLACNAN SGYNFYTGLD AEYAANGISS TDIAKLKIWS SDYPKEFPIC 550
    GSWILPASRF VIQNDDHDQQ NEGSSSRDMG DSGSVLIKDK DVAKHRSFEV 600
    KLFTRTDADW QIKVVLSSYT WFTNGAGGFP DGYSDCSGFD SSQGQKCTAS 650
    VPYEKAFRAG SCGYTVDGFA GGKYTRVHRD LSIVNAMRSW VGLSSVKLSD 700
    LGITGSC 707
    Length:707
    Mass (Da):76,711
    Last modified:December 15, 2009 - v1
    Checksum:i9B7292970E199C46
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS028124 Genomic DNA. Translation: EEY69307.1.
    RefSeqiXP_002999161.1. XM_002999115.1.

    Genome annotation databases

    EnsemblProtistsiPITG_05526T0; PITG_05526T0; PITG_05526.
    GeneIDi9466091.
    KEGGipif:PITG_05526.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS028124 Genomic DNA. Translation: EEY69307.1 .
    RefSeqi XP_002999161.1. XM_002999115.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi PITG_05526T0 ; PITG_05526T0 ; PITG_05526 .
    GeneIDi 9466091.
    KEGGi pif:PITG_05526.

    Phylogenomic databases

    HOGENOMi HOG000182360.
    KOi K01176.
    OMAi SSDYPKE.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR006046. Alpha_amylase.
    IPR005085. CBM_fam25.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF03423. CBM_25. 1 hit.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans."
      The Broad Institute Genome Sequencing Platform
      Haas B.J., Kamoun S., Zody M.C., Jiang R.H., Handsaker R.E., Cano L.M., Grabherr M., Kodira C.D., Raffaele S., Torto-Alalibo T., Bozkurt T.O., Ah-Fong A.M., Alvarado L., Anderson V.L., Armstrong M.R., Avrova A., Baxter L., Beynon J.
      , Boevink P.C., Bollmann S.R., Bos J.I., Bulone V., Cai G., Cakir C., Carrington J.C., Chawner M., Conti L., Costanzo S., Ewan R., Fahlgren N., Fischbach M.A., Fugelstad J., Gilroy E.M., Gnerre S., Green P.J., Grenville-Briggs L.J., Griffith J., Grunwald N.J., Horn K., Horner N.R., Hu C.H., Huitema E., Jeong D.H., Jones A.M., Jones J.D., Jones R.W., Karlsson E.K., Kunjeti S.G., Lamour K., Liu Z., Ma L., Maclean D., Chibucos M.C., McDonald H., McWalters J., Meijer H.J., Morgan W., Morris P.F., Munro C.A., O'Neill K., Ospina-Giraldo M., Pinzon A., Pritchard L., Ramsahoye B., Ren Q., Restrepo S., Roy S., Sadanandom A., Savidor A., Schornack S., Schwartz D.C., Schumann U.D., Schwessinger B., Seyer L., Sharpe T., Silvar C., Song J., Studholme D.J., Sykes S., Thines M., van de Vondervoort P.J., Phuntumart V., Wawra S., Weide R., Win J., Young C., Zhou S., Fry W., Meyers B.C., van West P., Ristaino J., Govers F., Birch P.R., Whisson S.C., Judelson H.S., Nusbaum C.
      Nature 461:393-398(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: T30-4Imported.

    Entry informationi

    Entry nameiD0N315_PHYIT
    AccessioniPrimary (citable) accession number: D0N315
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 15, 2009
    Last sequence update: December 15, 2009
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3