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Protein

Alpha-amylase

Gene

PITG_05526

Organism
Phytophthora infestans (strain T30-4) (Potato late blight fungus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
ORF Names:PITG_05526Imported
OrganismiPhytophthora infestans (strain T30-4) (Potato late blight fungus)Imported
Taxonomic identifieri403677 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesOomycetesPeronosporalesPhytophthora
ProteomesiUP000006643 Componenti: Partially assembled WGS sequence

Organism-specific databases

EuPathDBiFungiDB:PITG_05526.

Interactioni

Protein-protein interaction databases

STRINGi4787.PITG_05526T0.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000182360.
InParanoidiD0N315.
KOiK01176.
OMAiIQNDDHD.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR005085. CBM_fam25.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF03423. CBM_25. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

D0N315-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSASTSSEYP ASAGWFQYTL PAPQASLEFV FNNGNGVWDN NNNANYKATS
60 70 80 90 100
AGRWIVMSSV SVPAATKTST PAPTTTPSPS SPASPTPTST RAPTPTTPAP
110 120 130 140 150
TPSGSCYNYN GIDSCSSSTQ TELPAADDQR KWQTPPRNAS GWSAEYQDYR
160 170 180 190 200
SLTGYAHVVY GSSRTSATVT VRTYLRVASA SCSYTFNGVK STSPTYQVTN
210 220 230 240 250
SLKDDLVIVA TCTDGDESWK LELDPVNFVW QNNAVNQPSG MKGGQKGAIV
260 270 280 290 300
DLFGWPYNDI AQECTDFLGK AGYMGVKINP PQESVLTDAW PQSGQRNPWY
310 320 330 340 350
FVYQPVSYRL YSRLGTRKQL RTMIQTCRAN GVRVYADAVV NHMSGGGNDV
360 370 380 390 400
LSHRYSSGGS CVTWGAKSSS KKSPYYTHSF TYGVNAYTNA HPALEFPAVP
410 420 430 440 450
FGPTDFHCER SMSSWTDPLQ LETGWLSGLT DLNTETTYVR ERIAQYFVDL
460 470 480 490 500
LGIGFSGLRL DALKHIGPVD TGAIFGLLRK YMGGSSPDDF ISWGEVILGG
510 520 530 540 550
EASLLACNAN SGYNFYTGLD AEYAANGISS TDIAKLKIWS SDYPKEFPIC
560 570 580 590 600
GSWILPASRF VIQNDDHDQQ NEGSSSRDMG DSGSVLIKDK DVAKHRSFEV
610 620 630 640 650
KLFTRTDADW QIKVVLSSYT WFTNGAGGFP DGYSDCSGFD SSQGQKCTAS
660 670 680 690 700
VPYEKAFRAG SCGYTVDGFA GGKYTRVHRD LSIVNAMRSW VGLSSVKLSD

LGITGSC
Length:707
Mass (Da):76,711
Last modified:December 15, 2009 - v1
Checksum:i9B7292970E199C46
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS028124 Genomic DNA. Translation: EEY69307.1.
RefSeqiXP_002999161.1. XM_002999115.1.

Genome annotation databases

EnsemblProtistsiPITG_05526T0; PITG_05526T0; PITG_05526.
GeneIDi9466091.
KEGGipif:PITG_05526.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS028124 Genomic DNA. Translation: EEY69307.1.
RefSeqiXP_002999161.1. XM_002999115.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4787.PITG_05526T0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiPITG_05526T0; PITG_05526T0; PITG_05526.
GeneIDi9466091.
KEGGipif:PITG_05526.

Organism-specific databases

EuPathDBiFungiDB:PITG_05526.

Phylogenomic databases

HOGENOMiHOG000182360.
InParanoidiD0N315.
KOiK01176.
OMAiIQNDDHD.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR005085. CBM_fam25.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF03423. CBM_25. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans."
    The Broad Institute Genome Sequencing Platform
    Haas B.J., Kamoun S., Zody M.C., Jiang R.H., Handsaker R.E., Cano L.M., Grabherr M., Kodira C.D., Raffaele S., Torto-Alalibo T., Bozkurt T.O., Ah-Fong A.M., Alvarado L., Anderson V.L., Armstrong M.R., Avrova A., Baxter L., Beynon J.
    , Boevink P.C., Bollmann S.R., Bos J.I., Bulone V., Cai G., Cakir C., Carrington J.C., Chawner M., Conti L., Costanzo S., Ewan R., Fahlgren N., Fischbach M.A., Fugelstad J., Gilroy E.M., Gnerre S., Green P.J., Grenville-Briggs L.J., Griffith J., Grunwald N.J., Horn K., Horner N.R., Hu C.H., Huitema E., Jeong D.H., Jones A.M., Jones J.D., Jones R.W., Karlsson E.K., Kunjeti S.G., Lamour K., Liu Z., Ma L., Maclean D., Chibucos M.C., McDonald H., McWalters J., Meijer H.J., Morgan W., Morris P.F., Munro C.A., O'Neill K., Ospina-Giraldo M., Pinzon A., Pritchard L., Ramsahoye B., Ren Q., Restrepo S., Roy S., Sadanandom A., Savidor A., Schornack S., Schwartz D.C., Schumann U.D., Schwessinger B., Seyer L., Sharpe T., Silvar C., Song J., Studholme D.J., Sykes S., Thines M., van de Vondervoort P.J., Phuntumart V., Wawra S., Weide R., Win J., Young C., Zhou S., Fry W., Meyers B.C., van West P., Ristaino J., Govers F., Birch P.R., Whisson S.C., Judelson H.S., Nusbaum C.
    Nature 461:393-398(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: T30-4Imported.

Entry informationi

Entry nameiD0N315_PHYIT
AccessioniPrimary (citable) accession number: D0N315
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: June 24, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.