D0MIK6 (D0MIK6_RHOM4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
AMP-dependent synthetase and ligase EMBL ACY48314.1

Gene names

Ordered Locus Names:

Rmar_1427 EMBL ACY48314.1

Organism

Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis) [Complete proteome] [HAMAP] EMBL ACY48314.1

Taxonomic identifier

518766 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidetes Order II. Incertae sedis › Rhodothermaceae › Rhodothermus › Rhodothermus marinus

Protein attributes

Sequence length	663 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACY48314.1
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	ligase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0MIK6 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: E138E2CC912A6C74	FASTA	663	74,251
	10 20 30 40 50 60 MQIGSAFSLT TGTFPFNQPV VWEPRPEWIA ASNLQRFMNR HGIGSLDELQ ARSVDDPEWF 70 80 90 100 110 120 WPAVLEDLDI RFYRPYTRIL DLSEGPAFPR WCVGGQLNIV HNLLDKWQET DAAERIALRW 130 140 150 160 170 180 EGEEGTLRTL TYAGLHAEVC RCARALQSLG FQKGDVAALF MPMTPELVIA FLAVIKLGGI 190 200 210 220 230 240 VLPLFSGYGA EAVRTRIRDA EARFLFTADG FYRRGRPVYL KPVADEALAN CPSVQHVIVY 250 260 270 280 290 300 RRMEADNVPV PMLPGRDHWW HELVWPQPAE AETVRTDAED VLMVIYTSGT TGRPKGAVHT 310 320 330 340 350 360 HCGFPVKAAQ DMYQCMDLKP GETMYWVTDM GWMMGPWLVF GTLLIGATMV LYDGAPDYPD 370 380 390 400 410 420 VDRLWGLVEQ HRVTHLGISP TLIRALRPHG PEPIRRHDLS SLRAVGSTGS PWDPESWLWC 430 440 450 460 470 480 FEHVLGREKP ILNYSGGTEI SGGILCGNFF RPLKPCAFSG PVPGMAADVV DEQGRPVREA 490 500 510 520 530 540 VGELVIRKPW IGMTRGFWRD RERYLDTYWR RIEGLWVHGD FAAIDRDGLW YILGRSDDTI 550 560 570 580 590 600 KVAGKRVGPA EVEAILNAHE AVAESAAIGV PHEVKGEEVV AFVVLKPGVS PSEELRRELI 610 620 630 640 650 660 ERVVAALGKP LKPREIRFTT ALPKTRNAKI MRRVIRAAYL GQDPGDVSSL EDPAAVEAIR QAV

References

[1]

"Complete genome sequence of Rhodothermus marinus type strain (R-10)." Nolan M., Tindall B.J., Pomrenke H., Lapidus A., Copeland A., Glavina Del Rio T., Lucas S., Chen F., Tice H., Cheng J.-F., Saunders E., Han C., Bruce D., Goodwin L., Chain P., Pitluck S., Pati A., Ivanova N. , Mavromatis K., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.-J., Jeffries C.D., Brettin T., Goeker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P., Detter J.C. Stand. Genomic Sci. 1:283-290(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43812 / DSM 4252 / R-10.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001807 Genomic DNA. Translation: ACY48314.1.
RefSeq	YP_003290702.1. NC_013501.1.
3D structure databases
ProteinModelPortal	D0MIK6.
ModBase	Search...
Protein-protein interaction databases
STRING	518766.Rmar_1427.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACY48314; ACY48314; Rmar_1427.
GeneID	8568078.
KEGG	rmr:Rmar_1427.
PATRIC	32316949. VBIRhoMar93821_1443.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0365.
HOGENOM	HOG000229981.
KO	K01895.
Enzyme and pathway databases
BioCyc	RMAR518766:GJJ8-1459-MONOMER.
Family and domain databases
InterPro	IPR024597. Acyl-CoA_synth_DUF3448. IPR020845. AMP-binding_CS. IPR000873. AMP-dep_Synth/Lig. IPR025110. DUF4009. [Graphical view]
Pfam	PF00501. AMP-binding. 1 hit. PF11930. DUF3448. 1 hit. PF13193. DUF4009. 1 hit. [Graphical view]
PROSITE	PS00455. AMP_BINDING. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D0MIK6_RHOM4

Accession

Primary (citable) accession number: D0MIK6

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)