Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Outer membrane assembly lipoprotein YfiO

Gene

Rmar_0679

Organism
Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciRMAR518766:GJJ8-696-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Outer membrane assembly lipoprotein YfiOImported
Gene namesi
Ordered Locus Names:Rmar_0679Imported
OrganismiRhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis)Imported
Taxonomic identifieri518766 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeRhodothermus
Proteomesi
  • UP000002221 Componenti: Chromosome

PTM / Processingi

Keywords - PTMi

LipoproteinImported

Interactioni

Protein-protein interaction databases

STRINGi518766.Rmar_0679.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3QKYX-ray2.15A24-280[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini34 – 10471TPR_REGIONInterPro annotationAdd
BLAST
Domaini214 – 24734TPR_REGIONInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili152 – 17928Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4108N8J. Bacteria.
ENOG410ZZRH. LUCA.
HOGENOMiHOG000106318.
KOiK05807.
OMAiGYQFERF.
OrthoDBiPOG091H048Z.

Family and domain databases

CDDicd15830. BamD. 1 hit.
Gene3Di1.25.40.10. 2 hits.
InterProiIPR017689. BamD.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR019734. TPR_repeat.
[Graphical view]
SMARTiSM00028. TPR. 5 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR03302. OM_YfiO. 1 hit.
PROSITEiPS50293. TPR_REGION. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0MFQ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKSFRQIGG GWLLVIGLLV AGCAGSGRLR HSSPQEAFER AMEFYNQGKY
60 70 80 90 100
DRAIEYFKAV FTYGRTHEWA ADAQFYLARA YYQNKEYLLA ASEYERFIQI
110 120 130 140 150
YQIDPRVPQA EYERAMCYYK LSPPYELDQT DTRKAIEAFQ LFIDRYPNHE
160 170 180 190 200
LVDDATQKIR ELRAKLARKQ YEAARLYERR ELYEAAAVTY EAVFDAYPDT
210 220 230 240 250
PWADDALVGA MRAYIAYAEQ SVRARQPERY RRAVELYERL LQIFPDSPLL
260 270 280
RTAEELYTRA RQRLTELEGD ASLAQGQRQN
Length:280
Mass (Da):32,856
Last modified:December 15, 2009 - v1
Checksum:iAD437CC227B723AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001807 Genomic DNA. Translation: ACY47577.1.
RefSeqiWP_012843189.1. NC_013501.1.

Genome annotation databases

EnsemblBacteriaiACY47577; ACY47577; Rmar_0679.
KEGGirmr:Rmar_0679.
PATRICi32315397. VBIRhoMar93821_0681.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001807 Genomic DNA. Translation: ACY47577.1.
RefSeqiWP_012843189.1. NC_013501.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3QKYX-ray2.15A24-280[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi518766.Rmar_0679.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY47577; ACY47577; Rmar_0679.
KEGGirmr:Rmar_0679.
PATRICi32315397. VBIRhoMar93821_0681.

Phylogenomic databases

eggNOGiENOG4108N8J. Bacteria.
ENOG410ZZRH. LUCA.
HOGENOMiHOG000106318.
KOiK05807.
OMAiGYQFERF.
OrthoDBiPOG091H048Z.

Enzyme and pathway databases

BioCyciRMAR518766:GJJ8-696-MONOMER.

Family and domain databases

CDDicd15830. BamD. 1 hit.
Gene3Di1.25.40.10. 2 hits.
InterProiIPR017689. BamD.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR019734. TPR_repeat.
[Graphical view]
SMARTiSM00028. TPR. 5 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 2 hits.
TIGRFAMsiTIGR03302. OM_YfiO. 1 hit.
PROSITEiPS50293. TPR_REGION. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD0MFQ0_RHOM4
AccessioniPrimary (citable) accession number: D0MFQ0
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: September 7, 2016
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.