D0MDS5 (D0MDS5_RHOM4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Isocitrate dehydrogenase EMBL ACY49069.1
EC=1.1.1.41 EMBL ACY49069.1

Gene names

Ordered Locus Names:

Rmar_2190 EMBL ACY49069.1

Organism

Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis) [Complete proteome] [HAMAP] EMBL ACY49069.1

Taxonomic identifier

518766 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidetes Order II. Incertae sedis › Rhodothermaceae › Rhodothermus › Rhodothermus marinus

Protein attributes

Sequence length	485 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU004444 EMBL ACY49069.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glyoxylate cycle Inferred from electronic annotation. Source: InterPro tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	NAD binding Inferred from electronic annotation. Source: InterPro isocitrate dehydrogenase (NAD+) activity Inferred from electronic annotation. Source: EC isocitrate dehydrogenase (NADP+) activity Inferred from electronic annotation. Source: InterPro magnesium ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0MDS5 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: 0BA4C6C2CA5D1E6E	FASTA	485	53,293
	10 20 30 40 50 60 MSQPQEKYRV TIAYGDGIGP EIMRATLAVL EAAGAPLEYD VIEIGEKVYR QGITSGIPDE 70 80 90 100 110 120 AWEVLRRNRV FLKAPITTPQ GGGYKSLNVT IRKALGLFAN IRPTKSLHPY VETPYPDIDL 130 140 150 160 170 180 VIVRENEEDL YAAIEHRQTT EVVQALKLVT RPGSEGIIRY AFEYARAYGR RKVTCMSKDN 190 200 210 220 230 240 ILKLTDGLFH KIFEEIAAEY PDIEAEHRII DIGAALVAAR PETLDVIVTL NLYGDILSDI 250 260 270 280 290 300 AAQVAGSVGL GGSANVGTHA AMFEAIHGSA PDIAGKDIAN PSGLLNAAVM MLVHLGLADI 310 320 330 340 350 360 AARIENAWLR TIEDGIHTAD IYRPGKSKKK VGTQAFAEAV IARLGQEPQH LKPVHFRKPG 370 380 390 400 410 420 VSVEIRPTPR QPKQLVGVDV FIDWDEAGRD PNVLGRKLEA LAGEAFRLRV ITNRGVKVYP 430 440 450 460 470 480 GGLPETFCTD HWRCRFVAAE EGGTVTPAQI LELLRRIHEA GLEFIKTEHL YTFDGQRGFS LAQAE

References

[1]

"Complete genome sequence of Rhodothermus marinus type strain (R-10)." Nolan M., Tindall B.J., Pomrenke H., Lapidus A., Copeland A., Glavina Del Rio T., Lucas S., Chen F., Tice H., Cheng J.-F., Saunders E., Han C., Bruce D., Goodwin L., Chain P., Pitluck S., Pati A., Ivanova N. , Mavromatis K., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.-J., Jeffries C.D., Brettin T., Goeker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P., Detter J.C. Stand. Genomic Sci. 1:283-290(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43812 / DSM 4252 / R-10.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001807 Genomic DNA. Translation: ACY49069.1.
RefSeq	YP_003291457.1. NC_013501.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	518766.Rmar_2190.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACY49069; ACY49069; Rmar_2190.
GeneID	8568853.
KEGG	rmr:Rmar_2190.
PATRIC	32318507. VBIRhoMar93821_2212.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0473.
HOGENOM	HOG000021113.
KO	K00031.
Enzyme and pathway databases
BioCyc	RMAR518766:GJJ8-2234-MONOMER.
Family and domain databases
Gene3D	3.40.718.10. 1 hit.
InterPro	IPR019818. IsoCit/isopropylmalate_DH_CS. IPR001804. Isocitrate/isopropylmalate_DH. IPR014273. Isocitrate_DH_aproteobac-typ. IPR024084. IsoPropMal-DH-like_dom. [Graphical view]
PANTHER	PTHR11835. PTHR11835. 1 hit.
Pfam	PF00180. Iso_dh. 1 hit. [Graphical view]
TIGRFAMs	TIGR02924. ICDH_alpha. 1 hit.
PROSITE	PS00470. IDH_IMDH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D0MDS5_RHOM4

Accession

Primary (citable) accession number: D0MDS5

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)