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D0MCT3

- D0MCT3_RHOM4

UniProt

D0MCT3 - D0MCT3_RHOM4

Protein
Submitted name:

D-alanine--D-alanine ligase

Gene

Rmar_0135

Organism
Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (15 Dec 2009)
      Previous versions | rss
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    Functioni

    Cell wall formation.SAAS annotation

    Catalytic activityi

    ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.SAAS annotation

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.SAAS annotation

    Pathwayi

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. D-alanine-D-alanine ligase activity Source: UniProtKB-EC
    3. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. peptidoglycan biosynthetic process Source: UniProtKB-UniPathway
    2. regulation of cell shape Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseSAAS annotationImported

    Keywords - Biological processi

    Cell shape, Cell wall biogenesis/degradationSAAS annotation, Peptidoglycan synthesisSAAS annotation

    Keywords - Ligandi

    ATP-bindingSAAS annotation, MagnesiumSAAS annotation, ManganeseSAAS annotation, Metal-bindingSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciRMAR518766:GJJ8-140-MONOMER.
    UniPathwayiUPA00219.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    D-alanine--D-alanine ligaseImported (EC:6.3.2.4Imported)
    Gene namesi
    Ordered Locus Names:Rmar_0135Imported
    OrganismiRhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis)Imported
    Taxonomic identifieri518766 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeRhodothermus
    ProteomesiUP000002221: Chromosome

    Subcellular locationi

    Cytoplasm SAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi518766.Rmar_0135.

    Structurei

    3D structure databases

    ProteinModelPortaliD0MCT3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains ATP-grasp domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG1181.
    HOGENOMiHOG000011592.
    KOiK01921.
    OrthoDBiEOG66MQKK.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 2 hits.
    InterProiIPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view]
    PANTHERiPTHR23132. PTHR23132. 1 hit.
    PfamiPF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF52440. SSF52440. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D0MCT3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MHPNGLMRIG IVYDLFDDYP WEVGEPPDAD AENEPPETVD VLAAAIRKLG    50
    HKPVRIGTAY DLLVELPDLR IDCGISIAEG ARGRNREAYA PMLFEMAGIP 100
    YIGSDPLTLS LSLDKAWTKD LVAAAGVPTP PYRTYAGPED VDPHDLPGPF 150
    PLFVKPRYEG SSKGITAASK VHSLEALREQ VARLTATYRQ EVIVEPFIEG 200
    SEFTVAVIGN NPPEPLPVLQ RAVEATTGIG LHALEHRGMK PAAALEAAPY 250
    VPLTDELERC LQQLAVRVYE KLQCRDFARL DFRVDREGKP WFLEINPLPT 300
    FAPDGTFAIL AELMQRPYVE FLAEILQRGL RRLGLA 336
    Length:336
    Mass (Da):37,128
    Last modified:December 15, 2009 - v1
    Checksum:i77C050818A9843E9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001807 Genomic DNA. Translation: ACY47043.1.
    RefSeqiWP_012842655.1. NC_013501.1.
    YP_003289431.1. NC_013501.1.

    Genome annotation databases

    EnsemblBacteriaiACY47043; ACY47043; Rmar_0135.
    GeneIDi8566760.
    KEGGirmr:Rmar_0135.
    PATRICi32314281. VBIRhoMar93821_0134.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001807 Genomic DNA. Translation: ACY47043.1 .
    RefSeqi WP_012842655.1. NC_013501.1.
    YP_003289431.1. NC_013501.1.

    3D structure databases

    ProteinModelPortali D0MCT3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 518766.Rmar_0135.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACY47043 ; ACY47043 ; Rmar_0135 .
    GeneIDi 8566760.
    KEGGi rmr:Rmar_0135.
    PATRICi 32314281. VBIRhoMar93821_0134.

    Phylogenomic databases

    eggNOGi COG1181.
    HOGENOMi HOG000011592.
    KOi K01921.
    OrthoDBi EOG66MQKK.

    Enzyme and pathway databases

    UniPathwayi UPA00219 .
    BioCyci RMAR518766:GJJ8-140-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 2 hits.
    InterProi IPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view ]
    PANTHERi PTHR23132. PTHR23132. 1 hit.
    Pfami PF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52440. SSF52440. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43812 / DSM 4252 / R-10Imported.

    Entry informationi

    Entry nameiD0MCT3_RHOM4
    AccessioniPrimary (citable) accession number: D0MCT3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 15, 2009
    Last sequence update: December 15, 2009
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3