SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

D0MCT3

- D0MCT3_RHOM4

UniProt

D0MCT3 - D0MCT3_RHOM4

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name: D-alanine--D-alanine ligase
Gene
Rmar_0135
Organism
Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Cell wall formation By similarity.SAAS annotations

Catalytic activityi

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.SAAS annotations

Cofactori

Binds 2 magnesium or manganese ions per subunit By similarity.SAAS annotations

Pathwayi

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. D-alanine-D-alanine ligase activity Source: UniProtKB-EC
  3. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. peptidoglycan biosynthetic process Source: UniProtKB-UniPathway
  2. regulation of cell shape Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseSAAS annotationsImported

Keywords - Biological processi

Cell shape, Cell wall biogenesis/degradationSAAS annotations, Peptidoglycan synthesisSAAS annotations

Keywords - Ligandi

ATP-bindingSAAS annotations, MagnesiumSAAS annotations, ManganeseSAAS annotations, Metal-bindingSAAS annotations, Nucleotide-binding

Enzyme and pathway databases

BioCyciRMAR518766:GJJ8-140-MONOMER.
UniPathwayiUPA00219.

Names & Taxonomyi

Protein namesi
Submitted name:
D-alanine--D-alanine ligaseImported (EC:6.3.2.4Imported)
Gene namesi
Ordered Locus Names:Rmar_0135Imported
OrganismiRhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus obamensis)Imported
Taxonomic identifieri518766 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeRhodothermus
ProteomesiUP000002221: Chromosome

Subcellular locationi

Cytoplasm By similarity SAAS annotations

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotations

Interactioni

Protein-protein interaction databases

STRINGi518766.Rmar_0135.

Structurei

3D structure databases

ProteinModelPortaliD0MCT3.

Family & Domainsi

Sequence similaritiesi

Contains ATP-grasp domain.SAAS annotations

Phylogenomic databases

eggNOGiCOG1181.
HOGENOMiHOG000011592.
KOiK01921.
OrthoDBiEOG66MQKK.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
InterProiIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERiPTHR23132. PTHR23132. 1 hit.
PfamiPF07478. Dala_Dala_lig_C. 1 hit.
[Graphical view]
SUPFAMiSSF52440. SSF52440. 1 hit.
PROSITEiPS50975. ATP_GRASP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0MCT3-1 [UniParc]FASTAAdd to Basket

« Hide

MHPNGLMRIG IVYDLFDDYP WEVGEPPDAD AENEPPETVD VLAAAIRKLG    50
HKPVRIGTAY DLLVELPDLR IDCGISIAEG ARGRNREAYA PMLFEMAGIP 100
YIGSDPLTLS LSLDKAWTKD LVAAAGVPTP PYRTYAGPED VDPHDLPGPF 150
PLFVKPRYEG SSKGITAASK VHSLEALREQ VARLTATYRQ EVIVEPFIEG 200
SEFTVAVIGN NPPEPLPVLQ RAVEATTGIG LHALEHRGMK PAAALEAAPY 250
VPLTDELERC LQQLAVRVYE KLQCRDFARL DFRVDREGKP WFLEINPLPT 300
FAPDGTFAIL AELMQRPYVE FLAEILQRGL RRLGLA 336
Length:336
Mass (Da):37,128
Last modified:December 15, 2009 - v1
Checksum:i77C050818A9843E9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001807 Genomic DNA. Translation: ACY47043.1.
RefSeqiWP_012842655.1. NC_013501.1.
YP_003289431.1. NC_013501.1.

Genome annotation databases

EnsemblBacteriaiACY47043; ACY47043; Rmar_0135.
GeneIDi8566760.
KEGGirmr:Rmar_0135.
PATRICi32314281. VBIRhoMar93821_0134.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001807 Genomic DNA. Translation: ACY47043.1 .
RefSeqi WP_012842655.1. NC_013501.1.
YP_003289431.1. NC_013501.1.

3D structure databases

ProteinModelPortali D0MCT3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 518766.Rmar_0135.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACY47043 ; ACY47043 ; Rmar_0135 .
GeneIDi 8566760.
KEGGi rmr:Rmar_0135.
PATRICi 32314281. VBIRhoMar93821_0134.

Phylogenomic databases

eggNOGi COG1181.
HOGENOMi HOG000011592.
KOi K01921.
OrthoDBi EOG66MQKK.

Enzyme and pathway databases

UniPathwayi UPA00219 .
BioCyci RMAR518766:GJJ8-140-MONOMER.

Family and domain databases

Gene3Di 3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
InterProi IPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR016185. PreATP-grasp_dom.
[Graphical view ]
PANTHERi PTHR23132. PTHR23132. 1 hit.
Pfami PF07478. Dala_Dala_lig_C. 1 hit.
[Graphical view ]
SUPFAMi SSF52440. SSF52440. 1 hit.
PROSITEi PS50975. ATP_GRASP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43812 / DSM 4252 / R-10.

Entry informationi

Entry nameiD0MCT3_RHOM4
AccessioniPrimary (citable) accession number: D0MCT3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: September 3, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi