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D0M5C4 (D0M5C4_VIBSE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:VEA_004034 EMBL ACY52194.1
OrganismVibrio sp. (strain Ex25) [Complete proteome] [HAMAP] EMBL ACY52194.1
Taxonomic identifier150340 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length377 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionAminotransferase EMBL ACY52194.1
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processbiosynthetic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionpyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

transaminase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D0M5C4 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: 11748C7129D3E4D9

FASTA37742,220
        10         20         30         40         50         60 
MEEEGHKILK LNIGNPAPFG FDAPDEILVD VIRNLPTSQG YCDSKGIYSA RKAVVQHYQR 

        70         80         90        100        110        120 
KGIRSLDVED VYVGNGVSEL IVMAMQALLN NGDEMLIPAP DYPLWTASVA LSGGKPVHYL 

       130        140        150        160        170        180 
CDEGADWYPD LEDIKKKITP KTRGIVLINP NNPTGAVYSR DFLLEVIEIA RQHKLIIFAD 

       190        200        210        220        230        240 
EIYDKVLYDG ATHTSVATLT EDVLVMTFNG LSKAYRVCGF RGGWMFLTGP KHLAQGYVNG 

       250        260        270        280        290        300 
LELLSSMRLC ANVPMQHAIQ TALGGYQSIN ELILPGGRLL EQRNRAYELI NQIPGVSCVK 

       310        320        330        340        350        360 
PKGAMYLFPK IDTKMYNIKN DQQMVLDFLK QEKVLLVQGS GFNWPKPDHF RIVTLPHVED 

       370 
LEIAIGRFER FLSTYSQ 

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References

[1]"Sequence of the deep-sea isolate Vibrio sp. strain Ex25."
Munk A.C., Tapia R., Green L., Rogers Y., Detter J.C., Bruce D., Brettin T.S., Colwell R., Huq A., Grim C.J., Hasan N.A., Vonstein V., Bartels D.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ex25.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001805 Genomic DNA. Translation: ACY52194.1.
RefSeqYP_003286659.1. NC_013456.1.

3D structure databases

ProteinModelPortalD0M5C4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING150340.VEA_004034.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY52194; ACY52194; VEA_004034.
GeneID8557773.
KEGGvex:VEA_004034.
PATRIC32538129. VBIVibSp203755_2430.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000223042.
KOK14260.
OMAYQARDMR.
OrthoDBEOG6X9MJ6.

Enzyme and pathway databases

BioCycVSP150340:GJJG-2536-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD0M5C4_VIBSE
AccessionPrimary (citable) accession number: D0M5C4
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 14, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)