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D0M4D7 (D0M4D7_VIBSE) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=3.2.1.1 EMBL ACY50164.1
Gene names
Ordered Locus Names:VEA_002001 EMBL ACY50164.1
OrganismVibrio sp. (strain Ex25) [Complete proteome] [HAMAP] EMBL ACY50164.1
Taxonomic identifier150340 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length694 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D0M4D7 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: C7426E17E3D8F91C

FASTA69478,779
        10         20         30         40         50         60 
MKKTILALSI GLLSACSQIP ENAIVLSVGD DTAVFEANSN GLLVAEQKLE KGSYTFTIAD 

        70         80         90        100        110        120 
SNQTCGSSFA LAEEDRIKFN RPLKMDNCAT DAQMPLRIFK ANTYQFTLNP TTNELTVRLK 

       130        140        150        160        170        180 
PKQNQDITYS CPVATDAPKT INVEQTFNDG TVVRDALTGQ QATVANGSVT MQPGPMSQGL 

       190        200        210        220        230        240 
LLLEEVEQQA EKPFSWDNAT VYFVMTDRFY NGNPDNDNSY GRSKDGKYEI GTFHGGDLAG 

       250        260        270        280        290        300 
LTKKLDYIES LGVNAIWITS PLEQIHGWVG GGDKGDFKHY GYHGYYHQDW TKLDANMGSE 

       310        320        330        340        350        360 
DELRTFVDTA HKKGIRVIWD VVMNHTGYAT LADMQEFGFG QLYLDDQEAK EVLGEKWTDW 

       370        380        390        400        410        420 
QPKSGQSWHS FNDYIKYSDS EAWDKWWGKG WIRTDIGDYD APGYNDITMS LNYLPDLKTE 

       430        440        450        460        470        480 
STQKTGLPNF FRNKDTNAQD ELQTPREHLI TWLSDWVRDY GIDGFRVDTA KHVEMEAWAE 

       490        500        510        520        530        540 
LKASTTQALA QWKQNNPDKA LDDLPFWMTG EVWAHSVVKS PYFDNGFDSI INFEFQSDVA 

       550        560        570        580        590        600 
PKALKCFAQL DSDYRRYAER INSDPEFNVL SYLSSHDTQL FWSARSRSFD DQARAANALM 

       610        620        630        640        650        660 
LAPGAVQIYY GDEIARDFGV TGSDPTQGTR SDMPWDKIHG EREDLLQHWQ KLGEFRQRHP 

       670        680        690 
AVAQGKHITR NQEGYYAFER QYHDDKVLIV YTGE 

« Hide

References

[1]"Sequence of the deep-sea isolate Vibrio sp. strain Ex25."
Munk A.C., Tapia R., Green L., Rogers Y., Detter J.C., Bruce D., Brettin T.S., Colwell R., Huq A., Grim C.J., Hasan N.A., Vonstein V., Bartels D.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ex25.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001805 Genomic DNA. Translation: ACY50164.1.
RefSeqYP_003284629.1. NC_013456.1.

3D structure databases

ProteinModelPortalD0M4D7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING150340.VEA_002001.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY50164; ACY50164; VEA_002001.
GeneID8555641.
KEGGvex:VEA_002001.
PATRIC32533851. VBIVibSp203755_0391.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000273912.
KOK01176.
OMAGQNWHSF.
OrthoDBEOG65QWH3.

Enzyme and pathway databases

BioCycVSP150340:GJJG-404-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD0M4D7_VIBSE
AccessionPrimary (citable) accession number: D0M4D7
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: November 13, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)