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D0M4D7

- D0M4D7_VIBSE

UniProt

D0M4D7 - D0M4D7_VIBSE

Protein
Submitted name:

Periplasmic alpha-amylase

Gene

VEA_002001

Organism
Vibrio sp. (strain Ex25)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 27 (01 Oct 2014)
      Sequence version 1 (15 Dec 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseImported, Hydrolase

    Enzyme and pathway databases

    BioCyciVSP150340:GJJG-404-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Periplasmic alpha-amylaseImported (EC:3.2.1.1Imported)
    Gene namesi
    Ordered Locus Names:VEA_002001Imported
    OrganismiVibrio sp. (strain Ex25)Imported
    Taxonomic identifieri150340 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000002571: Chromosome 1

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi150340.VEA_002001.

    Structurei

    3D structure databases

    ProteinModelPortaliD0M4D7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000273912.
    KOiK01176.
    OMAiGQNWHSF.
    OrthoDBiEOG65QWH3.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D0M4D7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKKTILALSI GLLSACSQIP ENAIVLSVGD DTAVFEANSN GLLVAEQKLE    50
    KGSYTFTIAD SNQTCGSSFA LAEEDRIKFN RPLKMDNCAT DAQMPLRIFK 100
    ANTYQFTLNP TTNELTVRLK PKQNQDITYS CPVATDAPKT INVEQTFNDG 150
    TVVRDALTGQ QATVANGSVT MQPGPMSQGL LLLEEVEQQA EKPFSWDNAT 200
    VYFVMTDRFY NGNPDNDNSY GRSKDGKYEI GTFHGGDLAG LTKKLDYIES 250
    LGVNAIWITS PLEQIHGWVG GGDKGDFKHY GYHGYYHQDW TKLDANMGSE 300
    DELRTFVDTA HKKGIRVIWD VVMNHTGYAT LADMQEFGFG QLYLDDQEAK 350
    EVLGEKWTDW QPKSGQSWHS FNDYIKYSDS EAWDKWWGKG WIRTDIGDYD 400
    APGYNDITMS LNYLPDLKTE STQKTGLPNF FRNKDTNAQD ELQTPREHLI 450
    TWLSDWVRDY GIDGFRVDTA KHVEMEAWAE LKASTTQALA QWKQNNPDKA 500
    LDDLPFWMTG EVWAHSVVKS PYFDNGFDSI INFEFQSDVA PKALKCFAQL 550
    DSDYRRYAER INSDPEFNVL SYLSSHDTQL FWSARSRSFD DQARAANALM 600
    LAPGAVQIYY GDEIARDFGV TGSDPTQGTR SDMPWDKIHG EREDLLQHWQ 650
    KLGEFRQRHP AVAQGKHITR NQEGYYAFER QYHDDKVLIV YTGE 694
    Length:694
    Mass (Da):78,779
    Last modified:December 15, 2009 - v1
    Checksum:iC7426E17E3D8F91C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001805 Genomic DNA. Translation: ACY50164.1.
    RefSeqiWP_012841259.1. NC_013456.1.
    YP_003284629.1. NC_013456.1.

    Genome annotation databases

    EnsemblBacteriaiACY50164; ACY50164; VEA_002001.
    GeneIDi8555641.
    KEGGivex:VEA_002001.
    PATRICi32533851. VBIVibSp203755_0391.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001805 Genomic DNA. Translation: ACY50164.1 .
    RefSeqi WP_012841259.1. NC_013456.1.
    YP_003284629.1. NC_013456.1.

    3D structure databases

    ProteinModelPortali D0M4D7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 150340.VEA_002001.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACY50164 ; ACY50164 ; VEA_002001 .
    GeneIDi 8555641.
    KEGGi vex:VEA_002001.
    PATRICi 32533851. VBIVibSp203755_0391.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000273912.
    KOi K01176.
    OMAi GQNWHSF.
    OrthoDBi EOG65QWH3.

    Enzyme and pathway databases

    BioCyci VSP150340:GJJG-404-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence of the deep-sea isolate Vibrio sp. strain Ex25."
      Munk A.C., Tapia R., Green L., Rogers Y., Detter J.C., Bruce D., Brettin T.S., Colwell R., Huq A., Grim C.J., Hasan N.A., Vonstein V., Bartels D.
      Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Ex25Imported.

    Entry informationi

    Entry nameiD0M4D7_VIBSE
    AccessioniPrimary (citable) accession number: D0M4D7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 15, 2009
    Last sequence update: December 15, 2009
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3