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Protein
Submitted name:

Periplasmic alpha-amylase

Gene

VEA_002001

Organism
Vibrio sp. (strain Ex25)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciVSP150340:GJJG-404-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Periplasmic alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Ordered Locus Names:VEA_002001Imported
OrganismiVibrio sp. (strain Ex25)Imported
Taxonomic identifieri150340 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002571: Chromosome 1

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi150340.VEA_002001.

Structurei

3D structure databases

ProteinModelPortaliD0M4D7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiFNWHNAT.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

D0M4D7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKKTILALSI GLLSACSQIP ENAIVLSVGD DTAVFEANSN GLLVAEQKLE
60 70 80 90 100
KGSYTFTIAD SNQTCGSSFA LAEEDRIKFN RPLKMDNCAT DAQMPLRIFK
110 120 130 140 150
ANTYQFTLNP TTNELTVRLK PKQNQDITYS CPVATDAPKT INVEQTFNDG
160 170 180 190 200
TVVRDALTGQ QATVANGSVT MQPGPMSQGL LLLEEVEQQA EKPFSWDNAT
210 220 230 240 250
VYFVMTDRFY NGNPDNDNSY GRSKDGKYEI GTFHGGDLAG LTKKLDYIES
260 270 280 290 300
LGVNAIWITS PLEQIHGWVG GGDKGDFKHY GYHGYYHQDW TKLDANMGSE
310 320 330 340 350
DELRTFVDTA HKKGIRVIWD VVMNHTGYAT LADMQEFGFG QLYLDDQEAK
360 370 380 390 400
EVLGEKWTDW QPKSGQSWHS FNDYIKYSDS EAWDKWWGKG WIRTDIGDYD
410 420 430 440 450
APGYNDITMS LNYLPDLKTE STQKTGLPNF FRNKDTNAQD ELQTPREHLI
460 470 480 490 500
TWLSDWVRDY GIDGFRVDTA KHVEMEAWAE LKASTTQALA QWKQNNPDKA
510 520 530 540 550
LDDLPFWMTG EVWAHSVVKS PYFDNGFDSI INFEFQSDVA PKALKCFAQL
560 570 580 590 600
DSDYRRYAER INSDPEFNVL SYLSSHDTQL FWSARSRSFD DQARAANALM
610 620 630 640 650
LAPGAVQIYY GDEIARDFGV TGSDPTQGTR SDMPWDKIHG EREDLLQHWQ
660 670 680 690
KLGEFRQRHP AVAQGKHITR NQEGYYAFER QYHDDKVLIV YTGE
Length:694
Mass (Da):78,779
Last modified:December 15, 2009 - v1
Checksum:iC7426E17E3D8F91C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001805 Genomic DNA. Translation: ACY50164.1.
RefSeqiWP_012841259.1. NC_013456.1.
YP_003284629.1. NC_013456.1.

Genome annotation databases

EnsemblBacteriaiACY50164; ACY50164; VEA_002001.
GeneIDi8555641.
KEGGivex:VEA_002001.
PATRICi32533851. VBIVibSp203755_0391.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001805 Genomic DNA. Translation: ACY50164.1.
RefSeqiWP_012841259.1. NC_013456.1.
YP_003284629.1. NC_013456.1.

3D structure databases

ProteinModelPortaliD0M4D7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi150340.VEA_002001.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY50164; ACY50164; VEA_002001.
GeneIDi8555641.
KEGGivex:VEA_002001.
PATRICi32533851. VBIVibSp203755_0391.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiFNWHNAT.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciVSP150340:GJJG-404-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence of the deep-sea isolate Vibrio sp. strain Ex25."
    Munk A.C., Tapia R., Green L., Rogers Y., Detter J.C., Bruce D., Brettin T.S., Colwell R., Huq A., Grim C.J., Hasan N.A., Vonstein V., Bartels D.
    Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ex25Imported.

Entry informationi

Entry nameiD0M4D7_VIBSE
AccessioniPrimary (citable) accession number: D0M4D7
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: January 7, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.