D0M3Z5 (D0M3Z5_VIBSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

VEA_003802

Organism

Vibrio sp. (strain Ex25) [Complete proteome] [HAMAP] EMBL ACY51962.1

Taxonomic identifier

150340 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length	230 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0M3Z5 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: 8622917005505DD7	FASTA	230	26,153
	10 20 30 40 50 60 MFDILHTHPD FLIINKHPNV SVHKDDGDTM LLQEVAKQSG DEQLYLIHRL DKMTSGILFL 70 80 90 100 110 120 GRNAKAASAL SQAFADRQVE KFYLAIGSKK PKKKQGLVVG DMERSRRSSW KLVNSKNNPA 130 140 150 160 170 180 VTQFFSLAAE PGERLFLCKP HTGKTHQIRV ALKSVGSGIV GDPIYNAGNE ADRGYLHAFS 190 200 210 220 230 LCFQYRDEQY RFVCDPREHK MLGKKWHSET VSQGLDTWLS PWELNWPTIK

References

[1]

"Sequence of the deep-sea isolate Vibrio sp. strain Ex25." Munk A.C., Tapia R., Green L., Rogers Y., Detter J.C., Bruce D., Brettin T.S., Colwell R., Huq A., Grim C.J., Hasan N.A., Vonstein V., Bartels D. Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ex25.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001805 Genomic DNA. Translation: ACY51962.1.
RefSeq	YP_003286427.1. NC_013456.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	150340.VEA_003802.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACY51962; ACY51962; VEA_003802.
GeneID	8557537.
KEGG	vex:VEA_003802.
PATRIC	32537657. VBIVibSp203755_2198.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000275915.
KO	K06177.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006508. PsdUridine_synth_RluA-like. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR01621. RluA-like. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D0M3Z5_VIBSE

Accession

Primary (citable) accession number: D0M3Z5

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)