D0LZ30 (D0LZ30_HALO1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
UDP-N-acetylmuramyl-tripeptide synthetase EMBL ACY14500.1

Gene names

Ordered Locus Names:

Hoch_1954

Organism

Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [Complete proteome] [HAMAP]

Taxonomic identifier

502025 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Myxococcales › Nannocystineae › Kofleriaceae › Haliangium › Haliangium ochraceum

Protein attributes

Sequence length	1035 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Pathway	Cell wall biogenesis; peptidoglycan biosynthesis. RuleBase RU004135
Subcellular location	Cytoplasm By similarity RuleBase RU004135.
Sequence similarities	Belongs to the MurCDEF family. RuleBase RU003630

Ontologies

Keywords
Biological process	Cell cycle Cell division RuleBase RU004135 Cell shape Cell wall biogenesis/degradation RuleBase RU004135 Peptidoglycan synthesis RuleBase RU004135
Ligand	ATP-binding RuleBase RU003630 Nucleotide-binding
Molecular function	Ligase RuleBase RU003630
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cell cycle Inferred from electronic annotation. Source: UniProtKB-KW cell division Inferred from electronic annotation. Source: UniProtKB-KW peptidoglycan biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway regulation of cell shape Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW acid-amino acid ligase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0LZ30 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: 4B07B0BF23AD6089	FASTA	1,035	106,277
	10 20 30 40 50 60 MKLATLIQDL AELAAVRVVG DDARDIRAVR DDSRRVGPGD LFVAVRGART DGHAYLPAVI 70 80 90 100 110 120 DAGAAAVVVE RAIEDPALAA RVTQVIVPEG ARALGVLAAR MAGRPGERMR LVGITGTNGK 130 140 150 160 170 180 TTCSYLIESI LRAHDATCGV IGTVSYRYGA REVPAPYTTP TALILQEALG EMVAASCTHA 190 200 210 220 230 240 VLEVSSAALA MERLSGTTVE VAAFTNFTQD HLDVHGSMDA YRAAKERLFR DHLAENGVAV 250 260 270 280 290 300 IDVDDKAAPH MIAAAGERRV VRVSARPGAT AADAEVRVLA AETTIAGITA EFATPRGSFT 310 320 330 340 350 360 LRAPALLGHY NVANLAVAVA VCDALDVPHA TIARGIEAMS GVPGRVERVA NDAGLDILVD 370 380 390 400 410 420 YAHTPDALAS VLAALRPLTQ RRLLCVFGCG GDRDADKRPK MGAAAAAGAD LVVVTSDNPR 430 440 450 460 470 480 SEAPRAIIDQ ILPGVPAPFF VHSDRRVGIA AAVFEAVPGD IVLIAGKGHE TYQILGDDTV 490 500 510 520 530 540 HFDDREEAAR AAAARWGFPL AEMAAAAGGV LHAPEGCAEA ASRVVIDGRQ VAPGDLYVAI 550 560 570 580 590 600 RGEQHDGHAF CEQAANAGAC ALMVERGRAP RDAAGNALKL AVIEVDDTRL ALGSVARWHR 610 620 630 640 650 660 ARWGELPVYG CPNTGGDRDG DNGDERARAA KPVVGITGSA GKTTTKELIA AALSARYAVH 670 680 690 700 710 720 ATRASFNNET GVPLTLLALM PHHGAAVIEM GMRGLGQIAY LAELSAPTVA AVLNAGTAHI 730 740 750 760 770 780 GVVGSAEGIV RGKSEIFAAL GEGGVAVYPG DDERLSEYAR AAGRVLRFTQ ALPSGDEVPT 790 800 810 820 830 840 PAPAEVCAVA YAPAHRAGPG AATDAATDAA TGAATGAATK VLVGADIDLR VQLSPADDAR 850 860 870 880 890 900 VVRVPLALVG RHNAANAACA LACAIAAGVS AEDAAAAMGR ARPPALRGQV RELAGRRVLV 910 920 930 940 950 960 DCYNANPASM RAALATLTEL ARADGSRALA VLGDMLELGD EAARAHAEVG QMAGDLDVAV 970 980 990 1000 1010 1020 IALGEHAAAL AGAGAPGDDL ARVAASPDEA AAFLLSHTAP GDWVLVKGSR GMRLERVIDA 1030 ALVLVSAQER PSGET

References

[1]

"Complete genome sequence of Haliangium ochraceum type strain (SMP-2)." US DOE Joint Genome Institute (JGI-PGF) Ivanova N., Daum C., Lang E., Abt B., Kopitz M., Saunders E., Lapidus A., Lucas S., Glavina Del Rio T., Nolan M., Tice H., Copeland A., Cheng J.F., Chen F., Bruce D., Goodwin L., Pitluck S., Mavromatis K. , Pati A., Mikhailova N., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Detter J.C., Brettin T., Rohde M., Goker M., Bristow J., Markowitz V., Eisen J.A., Hugenholtz P., Kyrpides N.C., Klenk H.P. Stand. Genomic Sci. 2:96-106(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 14365 / JCM 11303 / SMP-2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001804 Genomic DNA. Translation: ACY14500.1.
RefSeq	YP_003266393.1. NC_013440.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	502025.Hoch_1954.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACY14500; ACY14500; Hoch_1954.
GeneID	8544336.
KEGG	hoh:Hoch_1954.
PATRIC	32193610. VBIHalOch22000_1950.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0770.
HOGENOM	HOG000026344.
KO	K15792.
Enzyme and pathway databases
BioCyc	HOCH502025:GI43-1966-MONOMER.
UniPathway	UPA00219.
Family and domain databases
Gene3D	3.40.1190.10. 3 hits. 3.90.190.20. 2 hits.
HAMAP	MF_00208. MurE.
InterPro	IPR004101. Mur_ligase_C. IPR013221. Mur_ligase_cen. IPR000713. Mur_ligase_N. IPR005761. UDP-N-AcMur-Glu-dNH2Pim_ligase. [Graphical view]
Pfam	PF01225. Mur_ligase. 2 hits. PF02875. Mur_ligase_C. 2 hits. PF08245. Mur_ligase_M. 2 hits. [Graphical view]
SUPFAM	SSF53244. Mur_ligase_C. 2 hits. SSF53623. Mur_ligase_cen. 2 hits.
TIGRFAMs	TIGR01085. murE. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D0LZ30_HALO1

Accession

Primary (citable) accession number: D0LZ30

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 29, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)