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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Hoch_5156

Organism
Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciHOCH502025:GI43-5197-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Hoch_5156Imported
OrganismiHaliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)Imported
Taxonomic identifieri502025 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesNannocystineaeKofleriaceaeHaliangium
ProteomesiUP000001880 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi502025.Hoch_5156.

Structurei

3D structure databases

ProteinModelPortaliD0LWJ4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

D0LWJ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNATKGTTMQ SPHLLRPGHR AASMYPPARP VSAPATRARS PRLTRAAAAL
60 70 80 90 100
LALLGLGACG GAPATQQPSE PGEPPVASEP DARPGSFADN PLVYFVITDR
110 120 130 140 150
FFDGNAENNH SYGRKGDGGD EIGTFHGGDL AGLTTKLEEG YFRALGVNAI
160 170 180 190 200
WITAPYEQIR GWVVGGDKAF QHYSYHGYYT LDYTVLDQNM GTPDELRRFV
210 220 230 240 250
DTAHEQDIRV IFDVVMNHPG YADLQTLDAF DIEVLWEGWE SATLSDYHSY
260 270 280 290 300
IDYNNFAFTE WWGPDWIRAG LPGYQEGNST DDLTMQLAYL PDFKTESEQP
310 320 330 340 350
VGLPPFLTRK ADTKAVAVDG YTVRDYLVAW LSAWVREYGI DGFRCDTAKH
360 370 380 390 400
VELAAWSELK QAGTEALAAW KQDNPGKAID DAPFWMTGEV FPHGVVRDAY
410 420 430 440 450
FDQGGFDNLI NFDFQNQLGD ILRGPASERW QRLDDLYADY AAQISDDASF
460 470 480 490 500
NVLSYISSHD TKLFDREALV AAGTALLLAP GGVQIFYGDE SARPLGPSVS
510 520 530 540 550
SDPQQNTRSD MNWDALADDV LAHWQTLGRF RRRHVALAKG THQKLGDAPY
560 570 580 590 600
VFARSRDDDA VVVALLGQLG EAGADASETV RVPVGDVFPV GTRLRDAATG
610 620 630
APLEVETDAS GGAVALTPGA SGVVLLERVA P
Length:631
Mass (Da):68,863
Last modified:December 15, 2009 - v1
Checksum:i6E518BDF11F5B7F9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001804 Genomic DNA. Translation: ACY17644.1.
RefSeqiYP_003269537.1. NC_013440.1.

Genome annotation databases

EnsemblBacteriaiACY17644; ACY17644; Hoch_5156.
GeneIDi8547567.
KEGGihoh:Hoch_5156.
PATRICi32200201. VBIHalOch22000_5220.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001804 Genomic DNA. Translation: ACY17644.1.
RefSeqiYP_003269537.1. NC_013440.1.

3D structure databases

ProteinModelPortaliD0LWJ4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi502025.Hoch_5156.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY17644; ACY17644; Hoch_5156.
GeneIDi8547567.
KEGGihoh:Hoch_5156.
PATRICi32200201. VBIHalOch22000_5220.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciHOCH502025:GI43-5197-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14365 / JCM 11303 / SMP-2Imported.

Entry informationi

Entry nameiD0LWJ4_HALO1
AccessioniPrimary (citable) accession number: D0LWJ4
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: January 7, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.