D0LT77 (D0LT77_HALO1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pyridoxal-dependent decarboxylase EMBL ACY19213.1

Gene names

Ordered Locus Names:

Hoch_6749

Organism

Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [Complete proteome] [HAMAP]

Taxonomic identifier

502025 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Myxococcales › Nannocystineae › Kofleriaceae › Haliangium › Haliangium ochraceum

Protein attributes

Sequence length	574 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	carboxy-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0LT77 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: AAE06DB2EA5E0E90	FASTA	574	63,298
	10 20 30 40 50 60 MSTSRRSRPP ASSASDTHPA PAEDGAVAES AGARVVADYF ASADGAAART LREGLDACLE 70 80 90 100 110 120 QHRASERISS AHSMDELRAH FCRSTIPEEP AAPESYLAFL REQVLPHAVK VGRPRYVGHM 130 140 150 160 170 180 TSALPNFLPH LAALLTELNQ NIVKIETSKV LTLIERQTLA MMHRLVFDLS DDFYQRHTQA 190 200 210 220 230 240 RESNLGVVVS CGTLANITAM WLARNRALQS SEEFLGLQSE GFLSALRHYG YQDAVIIGSE 250 260 270 280 290 300 LMHYSMDKLG SLIGLGAENI IKVATDGHGS IDLAALQDII ATCKDERRLI VALVGIAGTT 310 320 330 340 350 360 ETGAVDNLPA LAQVAEEHGI HFHVDAAWGG PILFSERHRD ILRGIERADT VTICGHKQLY 370 380 390 400 410 420 LPQGISMVLC RDPSLIYHIK ATARYQARAE SYDLGKHSPE GSRPAMSLFL HAGLQLIGRA 430 440 450 460 470 480 GYAHLIDEGV RKARLMAEMI REHEAFELLE EPQTNIVVYR YIPEELRPKL HAGSLSREDQ 490 500 510 520 530 540 YVINCINEVL QDQEFLGGDS FISRTSLVHS RHGRPEPVVV LRAVLANPLT TEDDLRAVIA 550 560 570 DQVNTADSVL RQRTMSFAQV LSLLYQQTSS FDRQ

References

[1]

"Complete genome sequence of Haliangium ochraceum type strain (SMP-2)." US DOE Joint Genome Institute (JGI-PGF) Ivanova N., Daum C., Lang E., Abt B., Kopitz M., Saunders E., Lapidus A., Lucas S., Glavina Del Rio T., Nolan M., Tice H., Copeland A., Cheng J.F., Chen F., Bruce D., Goodwin L., Pitluck S., Mavromatis K. , Pati A., Mikhailova N., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Detter J.C., Brettin T., Rohde M., Goker M., Bristow J., Markowitz V., Eisen J.A., Hugenholtz P., Kyrpides N.C., Klenk H.P. Stand. Genomic Sci. 2:96-106(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 14365 / JCM 11303 / SMP-2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001804 Genomic DNA. Translation: ACY19213.1.
RefSeq	YP_003271106.1. NC_013440.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	502025.Hoch_6749.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACY19213; ACY19213; Hoch_6749.
GeneID	8549166.
KEGG	hoh:Hoch_6749.
PATRIC	32203473. VBIHalOch22000_6850.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0076.
HOGENOM	HOG000282553.
KO	K01580.
Enzyme and pathway databases
BioCyc	HOCH502025:GI43-6796-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D0LT77_HALO1

Accession

Primary (citable) accession number: D0LT77

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)