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D0LQ83

- D0LQ83_HALO1

UniProt

D0LQ83 - D0LQ83_HALO1

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Protein
Submitted name: Exodeoxyribonuclease III Xth
Gene
Hoch_6423
Organism
Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-(apurinic or apyrimidinic site) lyase activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciHOCH502025:GI43-6469-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Exodeoxyribonuclease III XthImported (EC:4.2.99.18Imported)
Gene namesi
Ordered Locus Names:Hoch_6423Imported
OrganismiHaliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)Imported
Taxonomic identifieri502025 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesNannocystineaeKofleriaceaeHaliangium
ProteomesiUP000001880: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. intracellular Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi502025.Hoch_6423.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0708.
HOGENOMiHOG000034586.
KOiK01142.
OrthoDBiEOG6TBHJS.

Family and domain databases

Gene3Di3.60.10.10. 1 hit.
InterProiIPR004808. AP_endonuc_1.
IPR020848. AP_endonuclease_F1_CS.
IPR005135. Endo/exonuclease/phosphatase.
[Graphical view]
PANTHERiPTHR22748. PTHR22748. 1 hit.
PfamiPF03372. Exo_endo_phos. 1 hit.
[Graphical view]
SUPFAMiSSF56219. SSF56219. 2 hits.
TIGRFAMsiTIGR00633. xth. 1 hit.
PROSITEiPS00727. AP_NUCLEASE_F1_2. 1 hit.
PS51435. AP_NUCLEASE_F1_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0LQ83-1 [UniParc]FASTAAdd to Basket

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MLARVRVVSW NVNGLRAVDR TTPRRASAAA SPSPGQVRAS TGARAQRGGG    50
RFRRWIERVD ATIVGVQEVR ARRDALPRRL LQPRGWHAHL VEAERAGYSG 100
VGLYAKLAPD GADTALAGGD FDREGRLQIA HFGRLSVANV YFPNGNGSNR 150
DNSRVPFKLD FYRALFDALG ALRDAGQRVL VMGDFNTAHR DIDLARPKQN 200
RKTSGFLPEE RAELDRWVAA GWVDTFRHFE PGPGHYTWWS QRAGVRARNI 250
GWRIDYVFAC PEAMPFVRSA FLMPQVGGSD HCPHGVVLDP AITRAAPPLP 300
S 301
Length:301
Mass (Da):33,324
Last modified:December 15, 2009 - v1
Checksum:iDC86B4A751392112
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001804 Genomic DNA. Translation: ACY18892.1.
RefSeqiWP_012831484.1. NC_013440.1.
YP_003270785.1. NC_013440.1.

Genome annotation databases

EnsemblBacteriaiACY18892; ACY18892; Hoch_6423.
GeneIDi8548838.
KEGGihoh:Hoch_6423.
PATRICi32202801. VBIHalOch22000_6516.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001804 Genomic DNA. Translation: ACY18892.1 .
RefSeqi WP_012831484.1. NC_013440.1.
YP_003270785.1. NC_013440.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 502025.Hoch_6423.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACY18892 ; ACY18892 ; Hoch_6423 .
GeneIDi 8548838.
KEGGi hoh:Hoch_6423.
PATRICi 32202801. VBIHalOch22000_6516.

Phylogenomic databases

eggNOGi COG0708.
HOGENOMi HOG000034586.
KOi K01142.
OrthoDBi EOG6TBHJS.

Enzyme and pathway databases

BioCyci HOCH502025:GI43-6469-MONOMER.

Family and domain databases

Gene3Di 3.60.10.10. 1 hit.
InterProi IPR004808. AP_endonuc_1.
IPR020848. AP_endonuclease_F1_CS.
IPR005135. Endo/exonuclease/phosphatase.
[Graphical view ]
PANTHERi PTHR22748. PTHR22748. 1 hit.
Pfami PF03372. Exo_endo_phos. 1 hit.
[Graphical view ]
SUPFAMi SSF56219. SSF56219. 2 hits.
TIGRFAMsi TIGR00633. xth. 1 hit.
PROSITEi PS00727. AP_NUCLEASE_F1_2. 1 hit.
PS51435. AP_NUCLEASE_F1_4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14365 / JCM 11303 / SMP-2.

Entry informationi

Entry nameiD0LQ83_HALO1
AccessioniPrimary (citable) accession number: D0LQ83
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: September 3, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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