D0LQ83 (D0LQ83_HALO1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Exodeoxyribonuclease III Xth EMBL ACY18892.1
EC=4.2.99.18 EMBL ACY18892.1

Gene names

Ordered Locus Names:

Hoch_6423

Organism

Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [Complete proteome] [HAMAP]

Taxonomic identifier

502025 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Myxococcales › Nannocystineae › Kofleriaceae › Haliangium › Haliangium ochraceum

Protein attributes

Sequence length	301 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ACY18892.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro nucleic acid phosphodiester bond hydrolysis Inferred from electronic annotation. Source: GOC
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-(apurinic or apyrimidinic site) lyase activity Inferred from electronic annotation. Source: EC endonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0LQ83 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: DC86B4A751392112	FASTA	301	33,324
	10 20 30 40 50 60 MLARVRVVSW NVNGLRAVDR TTPRRASAAA SPSPGQVRAS TGARAQRGGG RFRRWIERVD 70 80 90 100 110 120 ATIVGVQEVR ARRDALPRRL LQPRGWHAHL VEAERAGYSG VGLYAKLAPD GADTALAGGD 130 140 150 160 170 180 FDREGRLQIA HFGRLSVANV YFPNGNGSNR DNSRVPFKLD FYRALFDALG ALRDAGQRVL 190 200 210 220 230 240 VMGDFNTAHR DIDLARPKQN RKTSGFLPEE RAELDRWVAA GWVDTFRHFE PGPGHYTWWS 250 260 270 280 290 300 QRAGVRARNI GWRIDYVFAC PEAMPFVRSA FLMPQVGGSD HCPHGVVLDP AITRAAPPLP S

References

[1]

"Complete genome sequence of Haliangium ochraceum type strain (SMP-2)." US DOE Joint Genome Institute (JGI-PGF) Ivanova N., Daum C., Lang E., Abt B., Kopitz M., Saunders E., Lapidus A., Lucas S., Glavina Del Rio T., Nolan M., Tice H., Copeland A., Cheng J.F., Chen F., Bruce D., Goodwin L., Pitluck S., Mavromatis K. , Pati A., Mikhailova N., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Detter J.C., Brettin T., Rohde M., Goker M., Bristow J., Markowitz V., Eisen J.A., Hugenholtz P., Kyrpides N.C., Klenk H.P. Stand. Genomic Sci. 2:96-106(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 14365 / JCM 11303 / SMP-2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001804 Genomic DNA. Translation: ACY18892.1.
RefSeq	YP_003270785.1. NC_013440.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	502025.Hoch_6423.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACY18892; ACY18892; Hoch_6423.
GeneID	8548838.
KEGG	hoh:Hoch_6423.
PATRIC	32202801. VBIHalOch22000_6516.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0708.
HOGENOM	HOG000034586.
KO	K01142.
Enzyme and pathway databases
BioCyc	HOCH502025:GI43-6468-MONOMER.
Family and domain databases
InterPro	IPR020848. AP_endonuclease_F1_CS. IPR005135. Endo/exonuclease/phosphatase. IPR004808. ExoDNase_III. [Graphical view]
PANTHER	PTHR22748. PTHR22748. 1 hit.
Pfam	PF03372. Exo_endo_phos. 1 hit. [Graphical view]
SUPFAM	SSF56219. Exo_endo_phos. 1 hit.
TIGRFAMs	TIGR00633. xth. 1 hit.
PROSITE	PS00727. AP_NUCLEASE_F1_2. 1 hit. PS51435. AP_NUCLEASE_F1_4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D0LQ83_HALO1

Accession

Primary (citable) accession number: D0LQ83

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)