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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

Hoch_2583

Organism
Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotation, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciHOCH502025:GI43-2600-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation (EC:2.1.1.-SAAS annotation)
Gene namesi
Ordered Locus Names:Hoch_2583Imported
OrganismiHaliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)Imported
Taxonomic identifieri502025 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesNannocystineaeKofleriaceaeHaliangium
Proteomesi
  • UP000001880 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi502025.Hoch_2583.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini209 – 500292SAM_MT_RSMB_NOPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037302.
KOiK03500.
OMAiNDCLIAN.
OrthoDBiPOG091H02E2.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0LLT9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAASDGRSGG PDGRPKSDVR PKSAGRGRRP GRGRGQDQGQ GQQVRDVAHR
60 70 80 90 100
VLRQVAKEGA FATLALGAAL KSSGLDARDR ALVTELCYGS LRQQMRLDRA
110 120 130 140 150
LAALTPRGLG KLDAATLSIL RVAAYEILFL ERVPAHASVN SAVRAARRLG
160 170 180 190 200
GQRFAGFANG VLRTLAREGE PALPPESEPR AHLAIAWSTP GWILDALSEM
210 220 230 240 250
VPAAELSEAV AAFNQPAPLT LRAHGVSVEA LAERLRALHP QGGFSLSPLA
260 270 280 290 300
PQALLAEGLG DPELSQAFAE GQFAVQDLGA QLAAHLLAPA AGARVLDACA
310 320 330 340 350
GVGGKSAHLA ALVGPEGRVD AADRSAGKLR LCAEGAARLG ADNVHTAALD
360 370 380 390 400
LASDDAVAWA QAGLAEAYDA VLLDAPCSGM GVLRRHPEAK LRLQPGDVGE
410 420 430 440 450
MAALQARLLD AVSARVRPGG VLVYSVCTFT RAEGPAQIAA FLDRRDEFAL
460 470 480 490 500
EAPPSPAESG VDWAAAGLTS EAAGAGAGTI RTWPHRHGAD GFFLARLRRR

A
Length:501
Mass (Da):51,980
Last modified:December 15, 2009 - v1
Checksum:iFA9BFAAE544DC7E2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001804 Genomic DNA. Translation: ACY15117.1.

Genome annotation databases

EnsemblBacteriaiACY15117; ACY15117; Hoch_2583.
KEGGihoh:Hoch_2583.
PATRICi32194890. VBIHalOch22000_2585.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001804 Genomic DNA. Translation: ACY15117.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi502025.Hoch_2583.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY15117; ACY15117; Hoch_2583.
KEGGihoh:Hoch_2583.
PATRICi32194890. VBIHalOch22000_2585.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037302.
KOiK03500.
OMAiNDCLIAN.
OrthoDBiPOG091H02E2.

Enzyme and pathway databases

BioCyciHOCH502025:GI43-2600-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD0LLT9_HALO1
AccessioniPrimary (citable) accession number: D0LLT9
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: September 7, 2016
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.