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Protein
Submitted name:

Uncharacterized protein

Gene

Hoch_4089

Organism
Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciHOCH502025:GI43-4120-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:Hoch_4089Imported
OrganismiHaliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)Imported
Taxonomic identifieri502025 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesNannocystineaeKofleriaceaeHaliangium
ProteomesiUP000001880: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2727 PotentialImportedAdd
BLAST
Chaini28 – 280253 PotentialImportedPRO_5000528729Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi502025.Hoch_4089.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4I66X-ray1.30A31-236[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiNOG323201.
HOGENOMiHOG000003271.
OrthoDBiEOG632D1S.

Family and domain databases

InterProiIPR025297. DUF4159.
IPR006311. TAT_signal.
[Graphical view]
PfamiPF13709. DUF4159. 1 hit.
[Graphical view]
PROSITEiPS51318. TAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

D0LJL3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRWSRRGVLG LGAAAAAWLA AGPARAIGPS SAFRFGQLAL GDRWDIYPQA
60 70 80 90 100
LSRMSREIDK RTSIEAAREP AAVTLSSPTL HETPFLYLAG DREFAIPPEP
110 120 130 140 150
EVEALRRHLT FGGFLLIDSA EGALGGAFDR SVRRLLQAVF PAPAPGLEIV
160 170 180 190 200
SGEHVVFKSF YLLERPLGRL ALSPVMEGIL RDGRLMVAYV QNDLGGAFAR
210 220 230 240 250
DDFGNFQLAC VPDGERQREL AFRMLVNLVM YALCLDYKSD QVHVPFIMRR
260 270 280
RQWRPRDGAD SLADPLQRPL QGPSRGPGQP
Length:280
Mass (Da):30,880
Last modified:December 15, 2009 - v1
Checksum:i03876CA81CC09A3E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001804 Genomic DNA. Translation: ACY16587.1.
RefSeqiYP_003268480.1. NC_013440.1.

Genome annotation databases

EnsemblBacteriaiACY16587; ACY16587; Hoch_4089.
GeneIDi8546490.
KEGGihoh:Hoch_4089.
PATRICi32197941. VBIHalOch22000_4097.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001804 Genomic DNA. Translation: ACY16587.1.
RefSeqiYP_003268480.1. NC_013440.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4I66X-ray1.30A31-236[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi502025.Hoch_4089.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY16587; ACY16587; Hoch_4089.
GeneIDi8546490.
KEGGihoh:Hoch_4089.
PATRICi32197941. VBIHalOch22000_4097.

Phylogenomic databases

eggNOGiNOG323201.
HOGENOMiHOG000003271.
OrthoDBiEOG632D1S.

Enzyme and pathway databases

BioCyciHOCH502025:GI43-4120-MONOMER.

Family and domain databases

InterProiIPR025297. DUF4159.
IPR006311. TAT_signal.
[Graphical view]
PfamiPF13709. DUF4159. 1 hit.
[Graphical view]
PROSITEiPS51318. TAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14365 / JCM 11303 / SMP-2Imported.
  2. "Crystal structure of Hoch_4089 protein from Haliangium ochraceum."
    Michalska K., Mack J.C., Endres M., Joachimiak A.
    Submitted (NOV-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.30 ANGSTROMS) OF 31-236.

Entry informationi

Entry nameiD0LJL3_HALO1
AccessioniPrimary (citable) accession number: D0LJL3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: February 4, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.