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D0LJL3 (D0LJL3_HALO1) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length280 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

Ontologies

Keywords
   DomainSignal EMBL ACY16587.1
   Technical term3D-structure PDB 4I66
Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2727 Potential EMBL ACY16587.1
Chain28 – 280253 Potential EMBL ACY16587.1
PRO_5000528729

Regions

Region215 – 2162Sulfate binding PDB 4I66

Sequences

Sequence LengthMass (Da)Tools
D0LJL3 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: 03876CA81CC09A3E

FASTA28030,880
        10         20         30         40         50         60 
MRWSRRGVLG LGAAAAAWLA AGPARAIGPS SAFRFGQLAL GDRWDIYPQA LSRMSREIDK 

        70         80         90        100        110        120 
RTSIEAAREP AAVTLSSPTL HETPFLYLAG DREFAIPPEP EVEALRRHLT FGGFLLIDSA 

       130        140        150        160        170        180 
EGALGGAFDR SVRRLLQAVF PAPAPGLEIV SGEHVVFKSF YLLERPLGRL ALSPVMEGIL 

       190        200        210        220        230        240 
RDGRLMVAYV QNDLGGAFAR DDFGNFQLAC VPDGERQREL AFRMLVNLVM YALCLDYKSD 

       250        260        270        280 
QVHVPFIMRR RQWRPRDGAD SLADPLQRPL QGPSRGPGQP 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Haliangium ochraceum type strain (SMP-2)."
US DOE Joint Genome Institute (JGI-PGF)
Ivanova N., Daum C., Lang E., Abt B., Kopitz M., Saunders E., Lapidus A., Lucas S., Glavina Del Rio T., Nolan M., Tice H., Copeland A., Cheng J.F., Chen F., Bruce D., Goodwin L., Pitluck S., Mavromatis K. expand/collapse author list , Pati A., Mikhailova N., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Detter J.C., Brettin T., Rohde M., Goker M., Bristow J., Markowitz V., Eisen J.A., Hugenholtz P., Kyrpides N.C., Klenk H.P.
Stand. Genomic Sci. 2:96-106(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14365 / JCM 11303 / SMP-2.
[2]"Crystal structure of Hoch_4089 protein from Haliangium ochraceum."
Michalska K., Mack J.C., Endres M., Joachimiak A.
Submitted (NOV-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.30 ANGSTROMS) OF 31-236 IN COMPLEX WITH SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001804 Genomic DNA. Translation: ACY16587.1.
RefSeqYP_003268480.1. NC_013440.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4I66X-ray1.30A31-236[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING502025.Hoch_4089.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY16587; ACY16587; Hoch_4089.
GeneID8546490.
KEGGhoh:Hoch_4089.
PATRIC32197941. VBIHalOch22000_4097.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG323201.
HOGENOMHOG000003271.
OrthoDBEOG632D1S.

Enzyme and pathway databases

BioCycHOCH502025:GI43-4120-MONOMER.

Family and domain databases

InterProIPR025297. DUF4159.
IPR006311. TAT_signal.
[Graphical view]
PfamPF13709. DUF4159. 1 hit.
[Graphical view]
PROSITEPS51318. TAT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0LJL3_HALO1
AccessionPrimary (citable) accession number: D0LJL3
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: February 19, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)