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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Gbro_3272

Organism
Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciGBRO526226:GHJF-3310-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Gbro_3272Imported
OrganismiGordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)Imported
Taxonomic identifieri526226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
ProteomesiUP000001219 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi526226.Gbro_3272.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
OMAiPDEWRID.
OrthoDBiEOG6FV833.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

D0LCY3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPDASAGEP VVLTVGDRPV RISSPDRVYF PERGETKMDL VEYYLSVGDG
60 70 80 90 100
IVRALRERPC MLHRFPKGVT GKKVHQKRVP AGAPDWLETT EIYFPRYGRT
110 120 130 140 150
ADELCVTELA SVIWAVQMST VEFHPWNSRR ADPESPDEWR IDLDPMPDCP
160 170 180 190 200
FSRIQRVAGV VHEVLDELGM RGFPKTSGGR GLHIYVRIEP DWGFPDVRRA
210 220 230 240 250
ALAFAREVEW RAPDDVTTTW WRKDRDPAAV FVDYNQNTRD HTMASAYSVR
260 270 280 290 300
GNPRATVSAP VTWSEIDDIE PDDFTIATMP ARFADLGDLH AEIDDVAHRI
310 320
DTLLAWAERD ELDGDTSDGP ESVDLDGS
Length:328
Mass (Da):36,979
Last modified:December 15, 2009 - v1
Checksum:i803D5CF5738189C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001802 Genomic DNA. Translation: ACY22476.1.
RefSeqiYP_003274369.1. NC_013441.1.

Genome annotation databases

EnsemblBacteriaiACY22476; ACY22476; Gbro_3272.
KEGGigbr:Gbro_3272.
PATRICi32186207. VBIGorBro114338_3344.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001802 Genomic DNA. Translation: ACY22476.1.
RefSeqiYP_003274369.1. NC_013441.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi526226.Gbro_3272.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY22476; ACY22476; Gbro_3272.
KEGGigbr:Gbro_3272.
PATRICi32186207. VBIGorBro114338_3344.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
OMAiPDEWRID.
OrthoDBiEOG6FV833.

Enzyme and pathway databases

BioCyciGBRO526226:GHJF-3310-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667Imported.

Entry informationi

Entry nameiD0LCY3_GORB4
AccessioniPrimary (citable) accession number: D0LCY3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: April 29, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.