D0L6V5 (D0L6V5_GORB4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, polymerase domain protein EMBL ACY23665.1

Gene names

Ordered Locus Names:

Gbro_4532

Organism

Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis) [Complete proteome] [HAMAP] EMBL ACY23665.1

Taxonomic identifier

526226 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Gordoniaceae › Gordonia › Gordonia bronchialis

Protein attributes

Sequence length	797 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0L6V5 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: 3A59FF379FD9BD12	FASTA	797	89,963
	10 20 30 40 50 60 MAPGDGTHLD VDGHRISITN LTKVLYPQTG TRKFEVIDYY SRIADVLLPH LRGRLVTRKR 70 80 90 100 110 120 WPNGVESTPF FEKDMPESAP AWITRHGIEH SQRVINYAVV DSRATLVWLA QMAALELHAH 130 140 150 160 170 180 QWRLPVIDDA LRANRMVLDL DPGPGVPLTE CAAVARLIRD LLADAGMDTY PVTSGGKGIH 190 200 210 220 230 240 VYARLPRPVS PDAARTLAKE IATRLSREHP DTITATMAKT HREQRIFIDW SQNSGSKTTL 250 260 270 280 290 300 SPYSLRGREQ PWVAAPRTWD ELDDPGLDQL LYTDVLDRVD ERGDLLDGLD DDYPASGPPS 310 320 330 340 350 360 EQTEVHTPRP PTEDSTGTDD RQVINLREYR RKRDAAKTPE PFGDESHQSR TAQTAAPSGD 370 380 390 400 410 420 PIFVIQEHHA RRLHYDFRLE HDGVLVSWAV PKNLPTDPDQ NRLAVRTEDH PMDYADFEGD 430 440 450 460 470 480 IPAGEYGGGH VSIWDRGTFT TEKWREKEII VRLAGERVQG RYALIKTGDK NWLAHLMSDE 490 500 510 520 530 540 PRPIVPDSLS DPRPMLATDE DIEGLSESEW AFEGKWDGYR ILLRYIGGEL RLTSRSGIDM 550 560 570 580 590 600 TRDFPEIAEI TEHLGLLDVV LDGEVVALDS TGRTNFTLLT SRNHTDEPYT LRLYLFDILY 610 620 630 640 650 660 LNGASLLRKT WTQRRELLEE LAPAFRHSRY VEVPPLLPGP GQVAADHSRE HNMEGVVAKR 670 680 690 700 710 720 RSSIYQQGRR SASWLKHKNW SDIEVVIGGW RPGRGSRENT IGSLLLGLPE ETGLRYVGRV 730 740 750 760 770 780 GTGFTDAALA SLAQELEPLR ISRSPFLEKL DRPVASTAIW VLPKIVGEVR FMDWTTTGHL 790 RHPSWRGIRR DKLPGDL

References

[1]

"The complete chromosome of Gordonia bronchialis DSM 43247." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Saunders E., Brettin T., Detter J.C., Han C., Larimer F. , Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Jando M., Schneider S., Goeker M., Klenk H.-P., Eisen J.A. Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001802 Genomic DNA. Translation: ACY23665.1.
RefSeq	YP_003275558.1. NC_013441.1.
3D structure databases
ProteinModelPortal	D0L6V5.
ModBase	Search...
Protein-protein interaction databases
STRING	526226.Gbro_4532.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACY23665; ACY23665; Gbro_4532.
GeneID	8553914.
KEGG	gbr:Gbro_4532.
PATRIC	32188848. VBIGorBro114338_4659.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	SGSKGIH.
Enzyme and pathway databases
BioCyc	GBRO526226:GHJF-4653-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D0L6V5_GORB4

Accession

Primary (citable) accession number: D0L6V5

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)