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D0L6V5

- D0L6V5_GORB4

UniProt

D0L6V5 - D0L6V5_GORB4

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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene
Gbro_4532
Organism
Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciGBRO526226:GHJF-4573-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Gbro_4532Imported
OrganismiGordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)Imported
Taxonomic identifieri526226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
ProteomesiUP000001219: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi526226.Gbro_4532.

Structurei

3D structure databases

ProteinModelPortaliD0L6V5.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0L6V5-1 [UniParc]FASTAAdd to Basket

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MAPGDGTHLD VDGHRISITN LTKVLYPQTG TRKFEVIDYY SRIADVLLPH    50
LRGRLVTRKR WPNGVESTPF FEKDMPESAP AWITRHGIEH SQRVINYAVV 100
DSRATLVWLA QMAALELHAH QWRLPVIDDA LRANRMVLDL DPGPGVPLTE 150
CAAVARLIRD LLADAGMDTY PVTSGGKGIH VYARLPRPVS PDAARTLAKE 200
IATRLSREHP DTITATMAKT HREQRIFIDW SQNSGSKTTL SPYSLRGREQ 250
PWVAAPRTWD ELDDPGLDQL LYTDVLDRVD ERGDLLDGLD DDYPASGPPS 300
EQTEVHTPRP PTEDSTGTDD RQVINLREYR RKRDAAKTPE PFGDESHQSR 350
TAQTAAPSGD PIFVIQEHHA RRLHYDFRLE HDGVLVSWAV PKNLPTDPDQ 400
NRLAVRTEDH PMDYADFEGD IPAGEYGGGH VSIWDRGTFT TEKWREKEII 450
VRLAGERVQG RYALIKTGDK NWLAHLMSDE PRPIVPDSLS DPRPMLATDE 500
DIEGLSESEW AFEGKWDGYR ILLRYIGGEL RLTSRSGIDM TRDFPEIAEI 550
TEHLGLLDVV LDGEVVALDS TGRTNFTLLT SRNHTDEPYT LRLYLFDILY 600
LNGASLLRKT WTQRRELLEE LAPAFRHSRY VEVPPLLPGP GQVAADHSRE 650
HNMEGVVAKR RSSIYQQGRR SASWLKHKNW SDIEVVIGGW RPGRGSRENT 700
IGSLLLGLPE ETGLRYVGRV GTGFTDAALA SLAQELEPLR ISRSPFLEKL 750
DRPVASTAIW VLPKIVGEVR FMDWTTTGHL RHPSWRGIRR DKLPGDL 797
Length:797
Mass (Da):89,963
Last modified:December 15, 2009 - v1
Checksum:i3A59FF379FD9BD12
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001802 Genomic DNA. Translation: ACY23665.1.
RefSeqiYP_003275558.1. NC_013441.1.

Genome annotation databases

EnsemblBacteriaiACY23665; ACY23665; Gbro_4532.
GeneIDi8553914.
KEGGigbr:Gbro_4532.
PATRICi32188848. VBIGorBro114338_4659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001802 Genomic DNA. Translation: ACY23665.1 .
RefSeqi YP_003275558.1. NC_013441.1.

3D structure databases

ProteinModelPortali D0L6V5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 526226.Gbro_4532.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACY23665 ; ACY23665 ; Gbro_4532 .
GeneIDi 8553914.
KEGGi gbr:Gbro_4532.
PATRICi 32188848. VBIGorBro114338_4659.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci GBRO526226:GHJF-4573-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667.

Entry informationi

Entry nameiD0L6V5_GORB4
AccessioniPrimary (citable) accession number: D0L6V5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: April 16, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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