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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Gbro_4532

Organism
Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciGBRO526226:GHJF-4573-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Gbro_4532Imported
OrganismiGordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)Imported
Taxonomic identifieri526226 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
ProteomesiUP000001219 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi526226.Gbro_4532.

Structurei

3D structure databases

ProteinModelPortaliD0L6V5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0L6V5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPGDGTHLD VDGHRISITN LTKVLYPQTG TRKFEVIDYY SRIADVLLPH
60 70 80 90 100
LRGRLVTRKR WPNGVESTPF FEKDMPESAP AWITRHGIEH SQRVINYAVV
110 120 130 140 150
DSRATLVWLA QMAALELHAH QWRLPVIDDA LRANRMVLDL DPGPGVPLTE
160 170 180 190 200
CAAVARLIRD LLADAGMDTY PVTSGGKGIH VYARLPRPVS PDAARTLAKE
210 220 230 240 250
IATRLSREHP DTITATMAKT HREQRIFIDW SQNSGSKTTL SPYSLRGREQ
260 270 280 290 300
PWVAAPRTWD ELDDPGLDQL LYTDVLDRVD ERGDLLDGLD DDYPASGPPS
310 320 330 340 350
EQTEVHTPRP PTEDSTGTDD RQVINLREYR RKRDAAKTPE PFGDESHQSR
360 370 380 390 400
TAQTAAPSGD PIFVIQEHHA RRLHYDFRLE HDGVLVSWAV PKNLPTDPDQ
410 420 430 440 450
NRLAVRTEDH PMDYADFEGD IPAGEYGGGH VSIWDRGTFT TEKWREKEII
460 470 480 490 500
VRLAGERVQG RYALIKTGDK NWLAHLMSDE PRPIVPDSLS DPRPMLATDE
510 520 530 540 550
DIEGLSESEW AFEGKWDGYR ILLRYIGGEL RLTSRSGIDM TRDFPEIAEI
560 570 580 590 600
TEHLGLLDVV LDGEVVALDS TGRTNFTLLT SRNHTDEPYT LRLYLFDILY
610 620 630 640 650
LNGASLLRKT WTQRRELLEE LAPAFRHSRY VEVPPLLPGP GQVAADHSRE
660 670 680 690 700
HNMEGVVAKR RSSIYQQGRR SASWLKHKNW SDIEVVIGGW RPGRGSRENT
710 720 730 740 750
IGSLLLGLPE ETGLRYVGRV GTGFTDAALA SLAQELEPLR ISRSPFLEKL
760 770 780 790
DRPVASTAIW VLPKIVGEVR FMDWTTTGHL RHPSWRGIRR DKLPGDL
Length:797
Mass (Da):89,963
Last modified:December 15, 2009 - v1
Checksum:i3A59FF379FD9BD12
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001802 Genomic DNA. Translation: ACY23665.1.
RefSeqiWP_012836150.1. NC_013441.1.
YP_003275558.1. NC_013441.1.

Genome annotation databases

EnsemblBacteriaiACY23665; ACY23665; Gbro_4532.
KEGGigbr:Gbro_4532.
PATRICi32188848. VBIGorBro114338_4659.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001802 Genomic DNA. Translation: ACY23665.1.
RefSeqiWP_012836150.1. NC_013441.1.
YP_003275558.1. NC_013441.1.

3D structure databases

ProteinModelPortaliD0L6V5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi526226.Gbro_4532.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY23665; ACY23665; Gbro_4532.
KEGGigbr:Gbro_4532.
PATRICi32188848. VBIGorBro114338_4659.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciGBRO526226:GHJF-4573-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667Imported.

Entry informationi

Entry nameiD0L6V5_GORB4
AccessioniPrimary (citable) accession number: D0L6V5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 27, 2015
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.