Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D0L6V5

- D0L6V5_GORB4

UniProt

D0L6V5 - D0L6V5_GORB4

Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Gbro_4532

Organism
Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (15 Dec 2009)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Enzyme and pathway databases

    BioCyciGBRO526226:GHJF-4573-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, polymerase domain proteinImported
    Gene namesi
    Ordered Locus Names:Gbro_4532Imported
    OrganismiGordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)Imported
    Taxonomic identifieri526226 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
    ProteomesiUP000001219: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi526226.Gbro_4532.

    Structurei

    3D structure databases

    ProteinModelPortaliD0L6V5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D0L6V5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPGDGTHLD VDGHRISITN LTKVLYPQTG TRKFEVIDYY SRIADVLLPH    50
    LRGRLVTRKR WPNGVESTPF FEKDMPESAP AWITRHGIEH SQRVINYAVV 100
    DSRATLVWLA QMAALELHAH QWRLPVIDDA LRANRMVLDL DPGPGVPLTE 150
    CAAVARLIRD LLADAGMDTY PVTSGGKGIH VYARLPRPVS PDAARTLAKE 200
    IATRLSREHP DTITATMAKT HREQRIFIDW SQNSGSKTTL SPYSLRGREQ 250
    PWVAAPRTWD ELDDPGLDQL LYTDVLDRVD ERGDLLDGLD DDYPASGPPS 300
    EQTEVHTPRP PTEDSTGTDD RQVINLREYR RKRDAAKTPE PFGDESHQSR 350
    TAQTAAPSGD PIFVIQEHHA RRLHYDFRLE HDGVLVSWAV PKNLPTDPDQ 400
    NRLAVRTEDH PMDYADFEGD IPAGEYGGGH VSIWDRGTFT TEKWREKEII 450
    VRLAGERVQG RYALIKTGDK NWLAHLMSDE PRPIVPDSLS DPRPMLATDE 500
    DIEGLSESEW AFEGKWDGYR ILLRYIGGEL RLTSRSGIDM TRDFPEIAEI 550
    TEHLGLLDVV LDGEVVALDS TGRTNFTLLT SRNHTDEPYT LRLYLFDILY 600
    LNGASLLRKT WTQRRELLEE LAPAFRHSRY VEVPPLLPGP GQVAADHSRE 650
    HNMEGVVAKR RSSIYQQGRR SASWLKHKNW SDIEVVIGGW RPGRGSRENT 700
    IGSLLLGLPE ETGLRYVGRV GTGFTDAALA SLAQELEPLR ISRSPFLEKL 750
    DRPVASTAIW VLPKIVGEVR FMDWTTTGHL RHPSWRGIRR DKLPGDL 797
    Length:797
    Mass (Da):89,963
    Last modified:December 15, 2009 - v1
    Checksum:i3A59FF379FD9BD12
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001802 Genomic DNA. Translation: ACY23665.1.
    RefSeqiYP_003275558.1. NC_013441.1.

    Genome annotation databases

    EnsemblBacteriaiACY23665; ACY23665; Gbro_4532.
    GeneIDi8553914.
    KEGGigbr:Gbro_4532.
    PATRICi32188848. VBIGorBro114338_4659.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001802 Genomic DNA. Translation: ACY23665.1 .
    RefSeqi YP_003275558.1. NC_013441.1.

    3D structure databases

    ProteinModelPortali D0L6V5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 526226.Gbro_4532.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACY23665 ; ACY23665 ; Gbro_4532 .
    GeneIDi 8553914.
    KEGGi gbr:Gbro_4532.
    PATRICi 32188848. VBIGorBro114338_4659.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci GBRO526226:GHJF-4573-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667Imported.

    Entry informationi

    Entry nameiD0L6V5_GORB4
    AccessioniPrimary (citable) accession number: D0L6V5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 15, 2009
    Last sequence update: December 15, 2009
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3