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D0KMH0 (D0KMH0_PECWW) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=2.4.1.129 EMBL ACX89521.1
Gene names
Ordered Locus Names:Pecwa_3786
OrganismPectobacterium wasabiae (strain WPP163) [Complete proteome] [HAMAP] EMBL ACX89521.1
Taxonomic identifier561231 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium

Protein attributes

Sequence length587 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D0KMH0 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: 2D3E07487D086C55

FASTA58763,583
        10         20         30         40         50         60 
MKAARTGKLK RQEDQASFVS WRFALLCGCI LLAMVGLMAR AAYLQVINPD KLVREGDMRS 

        70         80         90        100        110        120 
LRVQEVPTAR GMISDRAGRP LAVSVPVNAV WADPKEVNDR GGITLDTRWK ALSDALDIPL 

       130        140        150        160        170        180 
DQLATKINAN PKGRFVYLAR QVNPAIGEYV HKLKLPGINL RQESRRYYPS GQVTSHLIGF 

       190        200        210        220        230        240 
TNIDGQGIEG VEKSFDRWLT GQPGERTVRK DRFGRVIEDI SSVDSQAAHN LALSIDERLQ 

       250        260        270        280        290        300 
ALVYRELNNA VAFNKAESGT AVLVDVNTGE VLAMANSPSY NPNNLAGTPK DIMRNRAITD 

       310        320        330        340        350        360 
IFEPGSTVKP MVVMTALQRG VVKENSVLNT LPYYVNGHEI KDVARYSELT LTGVLQKSSN 

       370        380        390        400        410        420 
VGVSRLALAM PSSALVDTYA RFGLGKATNL GLVGESSGLY PQKQRWSDVE RATFSFGYGL 

       430        440        450        460        470        480 
MVTPLQLARV YATIGSFGIY RPLSITRVDP PVPGERVFPE ALVRSVVHMM ESVALPGGGG 

       490        500        510        520        530        540 
TKAAIKGYRI AIKTGTAKKV GPDGKYINKY IAYTAGVAPA SNPRFALVVV INDPQAGKYY 

       550        560        570        580 
GGAVSAPIFG AIMGGVLRTM NIEPDALPAG DKNEFVINRE EGSGGRS 

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References

[1]"Complete sequence of Pectobacterium wasabiae WPP163."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Balakrishnan V., Glasner J., Perna N.T.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WPP163.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001790 Genomic DNA. Translation: ACX89521.1.
RefSeqYP_003261128.1. NC_013421.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING561231.Pecwa_3786.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX89521; ACX89521; Pecwa_3786.
GeneID8532212.
KEGGpwa:Pecwa_3786.
PATRIC32281876. VBIPecWas23660_3738.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0768.
HOGENOMHOG000049554.
KOK03587.
OMAPDGKYIN.

Enzyme and pathway databases

BioCycPWAS561231:GHO0-3863-MONOMER.

Family and domain databases

Gene3D3.40.710.10. 1 hit.
InterProIPR012338. Beta-lactam/transpept-like.
IPR005311. PBP_dimer.
IPR001460. PCN-bd_Tpept.
[Graphical view]
PfamPF03717. PBP_dimer. 1 hit.
PF00905. Transpeptidase. 1 hit.
[Graphical view]
SUPFAMSSF56519. PBP_dimer. 1 hit.
SSF56601. PBP_transp_fold. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD0KMH0_PECWW
AccessionPrimary (citable) accession number: D0KMH0
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 29, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)