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D0KLP4

- D0KLP4_PECWW

UniProt

D0KLP4 - D0KLP4_PECWW

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Protein
Alanine racemase
Gene
Pecwa_3637
Organism
Pectobacterium wasabiae (strain WPP163)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotations

Cofactori

Pyridoxal phosphate By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei34 – 341Proton acceptor; specific for D-alanine By similarityUniRule annotation
Binding sitei129 – 1291Substrate By similarityUniRule annotation
Active sitei254 – 2541Proton acceptor; specific for L-alanine By similarityUniRule annotation
Binding sitei302 – 3021Substrate; via amide nitrogen By similarityUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciPWAS561231:GHO0-3714-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:Pecwa_3637Imported
OrganismiPectobacterium wasabiae (strain WPP163)Imported
Taxonomic identifieri561231 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
ProteomesiUP000000315: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei34 – 341N6-(pyridoxal phosphate)lysine By similarityUniRule annotation

Proteomic databases

PRIDEiD0KLP4.

Interactioni

Protein-protein interaction databases

STRINGi561231.Pecwa_3637.

Structurei

3D structure databases

ProteinModelPortaliD0KLP4.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0787.
HOGENOMiHOG000031446.
KOiK01775.
OMAiLWQLEAI.
OrthoDBiEOG6PP9NJ.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0KLP4-1 [UniParc]FASTAAdd to Basket

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MKTATAVISR RALRHNLQRI RQLAPGSQVV AVVKANAYGH GMIESAHTFC    50
DADCYGVARL SEALALRAAG ITKPIVLLEG FFSADDLPLL AEHQLETAVH 100
SPEQLAALEQ ATLPQPLRVW MKLDTGMHRL GVLPEQADAF WQRLTECRNV 150
VQPVNIMSHF CRADEPEAGT TERQLACFDA FTQGKPGAQS IAASGGILLW 200
PQAHRDRVRP GIILYGVSPL DNEDAAHFGF QPAMTFTSHL IAVREHKAGE 250
AVGYGSTWTS PRDTRLGVVA VGYGDGYPRC APAGTPVLIN GREVPLSGRV 300
SMDMITIDLG PDAQDKVGDE AILWGPALSV ERIAAHTGVS AYELITRLTQ 350
RATLEYTDN 359
Length:359
Mass (Da):38,876
Last modified:December 15, 2009 - v1
Checksum:iD13BCE5F15169B84
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001790 Genomic DNA. Translation: ACX89373.1.
RefSeqiYP_003260980.1. NC_013421.1.

Genome annotation databases

EnsemblBacteriaiACX89373; ACX89373; Pecwa_3637.
GeneIDi8532063.
KEGGipwa:Pecwa_3637.
PATRICi32281562. VBIPecWas23660_3576.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001790 Genomic DNA. Translation: ACX89373.1 .
RefSeqi YP_003260980.1. NC_013421.1.

3D structure databases

ProteinModelPortali D0KLP4.
ModBasei Search...

Protein-protein interaction databases

STRINGi 561231.Pecwa_3637.

Proteomic databases

PRIDEi D0KLP4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACX89373 ; ACX89373 ; Pecwa_3637 .
GeneIDi 8532063.
KEGGi pwa:Pecwa_3637.
PATRICi 32281562. VBIPecWas23660_3576.

Phylogenomic databases

eggNOGi COG0787.
HOGENOMi HOG000031446.
KOi K01775.
OMAi LWQLEAI.
OrthoDBi EOG6PP9NJ.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci PWAS561231:GHO0-3714-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WPP163Imported.

Entry informationi

Entry nameiD0KLP4_PECWW
AccessioniPrimary (citable) accession number: D0KLP4
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: July 9, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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