D0KFN5 (D0KFN5_PECWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL ACX88305.1

Gene names

Ordered Locus Names:

Pecwa_2545

Organism

Pectobacterium wasabiae (strain WPP163) [Complete proteome] [HAMAP] EMBL ACX88305.1

Taxonomic identifier

561231 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pectobacterium › Pectobacterium wasabiae

Protein attributes

Sequence length	421 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ACX88305.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0KFN5 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: C8083B6D5A6507CD	FASTA	421	45,119
	10 20 30 40 50 60 MKNSELNQRR LAATPRGVGV MCDFYAERAE NSTLWDVEGR EFIDFAAGIA VLNTGHRHPK 70 80 90 100 110 120 IVAAVREQLD RFTHTAYQIV PYGSYVTLAE RINALAPIQG AAKTTFFTTG AEAVENAVKI 130 140 150 160 170 180 ARAYTKRPGV IAFNAAFHGR TLLTMTLTGK VAPYSTGFGP FPGSIFHALY PNEKSGITVE 190 200 210 220 230 240 QALESVERLM HIDIAADQVA AILLEPVQGE GGFHVAPPAF ISGLRKLCDE HGILLIADEV 250 260 270 280 290 300 QTGFARTGKL FAMEYYAEKA DLITMAKSLG GGFPISGVVG RAEVMDAPSP GGLGGTYAGN 310 320 330 340 350 360 PLSVASALAV LDVIEEEKLC QRALRLGAAL VETLEKVKAQ CPALVAIRAQ GSMVAAEFND 370 380 390 400 410 420 PNTGKPSAEI TRQFQKSALE AGLLLLTCGV HGNVIRFLYP LTVPDEQFSK AMNILTRVLT Q

References

[1]

"Complete sequence of Pectobacterium wasabiae WPP163." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Balakrishnan V., Glasner J., Perna N.T. Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WPP163.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001790 Genomic DNA. Translation: ACX88305.1.
RefSeq	YP_003259912.1. NC_013421.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	561231.Pecwa_2545.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACX88305; ACX88305; Pecwa_2545.
GeneID	8530946.
KEGG	pwa:Pecwa_2545.
PATRIC	32279274. VBIPecWas23660_2457.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K00823.
OMA	NSFTHTA.
Enzyme and pathway databases
BioCyc	PWAS561231:GHO0-2596-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D0KFN5_PECWW

Accession

Primary (citable) accession number: D0KFN5

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)