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D0KFN5 (D0KFN5_PECWW) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Pecwa_2545 EMBL ACX88305.1
OrganismPectobacterium wasabiae (strain WPP163) [Complete proteome] [HAMAP] EMBL ACX88305.1
Taxonomic identifier561231 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium

Protein attributes

Sequence length421 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequences

Sequence LengthMass (Da)Tools
D0KFN5 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: C8083B6D5A6507CD

FASTA42145,119
        10         20         30         40         50         60 
MKNSELNQRR LAATPRGVGV MCDFYAERAE NSTLWDVEGR EFIDFAAGIA VLNTGHRHPK 

        70         80         90        100        110        120 
IVAAVREQLD RFTHTAYQIV PYGSYVTLAE RINALAPIQG AAKTTFFTTG AEAVENAVKI 

       130        140        150        160        170        180 
ARAYTKRPGV IAFNAAFHGR TLLTMTLTGK VAPYSTGFGP FPGSIFHALY PNEKSGITVE 

       190        200        210        220        230        240 
QALESVERLM HIDIAADQVA AILLEPVQGE GGFHVAPPAF ISGLRKLCDE HGILLIADEV 

       250        260        270        280        290        300 
QTGFARTGKL FAMEYYAEKA DLITMAKSLG GGFPISGVVG RAEVMDAPSP GGLGGTYAGN 

       310        320        330        340        350        360 
PLSVASALAV LDVIEEEKLC QRALRLGAAL VETLEKVKAQ CPALVAIRAQ GSMVAAEFND 

       370        380        390        400        410        420 
PNTGKPSAEI TRQFQKSALE AGLLLLTCGV HGNVIRFLYP LTVPDEQFSK AMNILTRVLT 


Q 

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References

[1]"Complete sequence of Pectobacterium wasabiae WPP163."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Balakrishnan V., Glasner J., Perna N.T.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WPP163 EMBL ACX88305.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001790 Genomic DNA. Translation: ACX88305.1.
RefSeqYP_003259912.1. NC_013421.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING561231.Pecwa_2545.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX88305; ACX88305; Pecwa_2545.
GeneID8530946.
KEGGpwa:Pecwa_2545.
PATRIC32279274. VBIPecWas23660_2457.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0160.
HOGENOMHOG000020206.
KOK00823.
OMAVMCDFFA.
OrthoDBEOG6QVRHN.

Enzyme and pathway databases

BioCycPWAS561231:GHO0-2597-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR00700. GABAtrnsam. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0KFN5_PECWW
AccessionPrimary (citable) accession number: D0KFN5
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 14, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)