D0KF24 (D0KF24_PECWW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Urea carboxylase EMBL ACX88263.1

Gene names

Ordered Locus Names:

Pecwa_2502

Organism

Pectobacterium wasabiae (strain WPP163) [Complete proteome] [HAMAP] EMBL ACX88263.1

Taxonomic identifier

561231 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pectobacterium › Pectobacterium wasabiae

Protein attributes

Sequence length	1204 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Ligand	Biotin RuleBase RU000428
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro biotin carboxylase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0KF24 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: 599257A076DEC05E	FASTA	1,204	131,272
	10 20 30 40 50 60 MFKTVLIANR GEIACRAIRT LKRLGITSVA IYSDADKNAQ HVKDADIAVS IGGEKASDSY 70 80 90 100 110 120 LCIDKVLSAA QQTGAEAIWP GYGFLSESLP FAAACEKAGI AFVGPTAQQI GEFGLKHRAR 130 140 150 160 170 180 ELAAAAGVPM TPGTPLLASL EEARVAAEEI GYPVMLKSTA GGGGIGLTRC ADTAALHAAW 190 200 210 220 230 240 ESVRRLGEQF FSDSGVFLER CIDRARHVEV QIFGDGKGRV VALGERDCSL QRRNQKVVEE 250 260 270 280 290 300 TPAPHLPDAT RAALLASAVK LGELVNYRSA GTVEFIYDAE RDAFFFLEVN TRLQVEHPVT 310 320 330 340 350 360 ECVTGLDLVE CMLRVAADEP LDWAQFAQLR RGAAIEVRIY AEDPLKNFQP SPGVLTEVAF 370 380 390 400 410 420 PDDVRVDGWV STGTEVSTYY DPMIAKLIVH EETRELALEK MQQALNATRL HGIATNLDYL 430 440 450 460 470 480 RQIITTDAFR SGTVWTRMLD SFTPSASVIE VIHPGTWSSV QDYPGRLGYW DIGVPPSGPM 490 500 510 520 530 540 DDFAFRLANR IVGNDEAAAG LEFTLQGPTL RFHSTAVIAL TGADCPAMLD GDIVPYWQPV 550 560 570 580 590 600 TIMAGQTLTL GRAQSGCRTY LAVRNGIDVP QYLGSRSTFA LGEFGGHAGR TLRVADMLAI 610 620 630 640 650 660 SQPTLPACTT PAPVSAPQAV DTALIPQYGN DWRIGVLYGP HGAPDFFTHA AIDEFFAAEW 670 680 690 700 710 720 QVHYNSNRLG VRLVGPKPSW TRANGGEAGL HPSNVHDCEY AIGAVNFTGD FPVILTRDGP 730 740 750 760 770 780 SLGGFVCPVT IAKAELWKVG QVKPGDRIRF HPISAEEALA LEQVQSACVS TLGVAHAPAF 790 800 810 820 830 840 DVPSLATTEH GSATVLAAVQ ATTTTPAAVY RQAGDNYILI EYGENVLDLA LRLRIHLLMV 850 860 870 880 890 900 AIRASETVGI EELSPGVRSL QVRYDSRILR QRALLDVLLH LESQLGDVSQ MTVPSRIVHL 910 920 930 940 950 960 PMAFEDSATL GAVERYRETV CANAPWLPNN VDFIQRINGL SSRDDVRDII FDASYLILGL 970 980 990 1000 1010 1020 GDVYLGAPCA VPVDPRHRLL SSKYNPARTF TAEGTVGIGG MYMCIYGMDS PGGYQLVGRT 1030 1040 1050 1060 1070 1080 LPIWNKFLKN DQFITDEPWL LRFFDQVRFY PVSEGELTTL REDFREGCAA IHIEETTFDF 1090 1100 1110 1120 1130 1140 AEHTRFLTEQ AEDIAAFRQR QASAFETEVA LWQQEEDSTP QEDILITPVE NDEDAFQVSA 1150 1160 1170 1180 1190 1200 DMNGNIWKVL VNVGDAIEAG QPLIIVEAMK MELTITAPQS GRVKRIGCLP GRPVRPGDAL LWLE

References

[1]

"Complete sequence of Pectobacterium wasabiae WPP163." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Balakrishnan V., Glasner J., Perna N.T. Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WPP163.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001790 Genomic DNA. Translation: ACX88263.1.
RefSeq	YP_003259870.1. NC_013421.1.
3D structure databases
ProteinModelPortal	D0KF24.
ModBase	Search...
Protein-protein interaction databases
STRING	561231.Pecwa_2502.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACX88263; ACX88263; Pecwa_2502.
GeneID	8530903.
KEGG	pwa:Pecwa_2502.
PATRIC	32279188. VBIPecWas23660_2414.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG4770.
HOGENOM	HOG000251581.
KO	K01941.
OMA	TLPIWNK.
Enzyme and pathway databases
BioCyc	PWAS561231:GHO0-2553-MONOMER.
Family and domain databases
Gene3D	3.30.1360.40. 1 hit. 3.30.1490.20. 1 hit. 3.30.470.20. 1 hit. 3.40.50.20. 1 hit.
InterPro	IPR003833. Allophan_hydro_1. IPR003778. Allophan_hydro_2. IPR024946. Arg_repress_C-like. IPR011761. ATP-grasp. IPR013815. ATP_grasp_subdomain_1. IPR013816. ATP_grasp_subdomain_2. IPR001882. Biotin_BS. IPR011764. Biotin_carboxylation_dom. IPR005482. Biotin_COase_C. IPR000089. Biotin_lipoyl. IPR005481. CarbamoylP_synth_lsu_N. IPR005479. CbamoylP_synth_lsu-like_ATP-bd. IPR016185. PreATP-grasp_dom. IPR011054. Rudment_hybrid_motif. IPR011053. Single_hybrid_motif. IPR014084. Urea_COase. [Graphical view]
Pfam	PF02682. AHS1. 1 hit. PF02626. AHS2. 1 hit. PF02785. Biotin_carb_C. 1 hit. PF00364. Biotin_lipoyl. 1 hit. PF00289. CPSase_L_chain. 1 hit. PF02786. CPSase_L_D2. 1 hit. [Graphical view]
SMART	SM00796. AHS1. 1 hit. SM00797. AHS2. 1 hit. SM00878. Biotin_carb_C. 1 hit. [Graphical view]
SUPFAM	SSF51230. Hybrid_motif. 1 hit. SSF52440. PreATP-grasp-like. 1 hit. SSF51246. Rudmnt_hyb_motif. 1 hit.
TIGRFAMs	TIGR00724. urea_amlyse_rel. 1 hit. TIGR02712. urea_carbox. 1 hit.
PROSITE	PS50975. ATP_GRASP. 1 hit. PS50979. BC. 1 hit. PS00188. BIOTIN. 1 hit. PS50968. BIOTINYL_LIPOYL. 1 hit. PS00866. CPSASE_1. 1 hit. PS00867. CPSASE_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D0KF24_PECWW

Accession

Primary (citable) accession number: D0KF24

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)