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D0K725

- D0K725_STAAD

UniProt

D0K725 - D0K725_STAAD

Protein

DNA replication and repair protein RecF

Gene

recF

Organism
Staphylococcus aureus (strain ED98)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 43 (01 Oct 2014)
      Sequence version 1 (15 Dec 2009)
      Previous versions | rss
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    Functioni

    The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.UniRule annotationSAAS annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi30 – 378ATPUniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. single-stranded DNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. DNA repair Source: UniProtKB-HAMAP
    2. DNA replication Source: UniProtKB-HAMAP
    3. SOS response Source: UniProtKB-HAMAP

    Keywords - Biological processi

    DNA damage, DNA repair, DNA replicationUniRule annotationSAAS annotation, SOS responseUniRule annotationSAAS annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotationSAAS annotation, DNA-bindingUniRule annotationSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciSAUR681288:GJ8Z-4-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA replication and repair protein RecFUniRule annotation
    Gene namesi
    Name:recFUniRule annotationImported
    Ordered Locus Names:SAAV_0004Imported
    OrganismiStaphylococcus aureus (strain ED98)Imported
    Taxonomic identifieri681288 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcus
    ProteomesiUP000002570: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi681288.SAAV_0004.

    Structurei

    3D structure databases

    ProteinModelPortaliD0K725.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RecF family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1195.
    HOGENOMiHOG000269559.
    KOiK03629.
    OMAiHVVFTGH.
    OrthoDBiEOG6HTP3X.

    Family and domain databases

    Gene3Di3.40.50.300. 2 hits.
    HAMAPiMF_00365. RecF.
    InterProiIPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    IPR003395. RecF/RecN/SMC_N.
    [Graphical view]
    PfamiPF02463. SMC_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 2 hits.
    TIGRFAMsiTIGR00611. recf. 1 hit.
    PROSITEiPS00617. RECF_1. 1 hit.
    PS00618. RECF_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D0K725-1 [UniParc]FASTAAdd to Basket

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    MKLNTLQLEN YRNYDEVTLK CHPDVNILIG ENAQGKTNLL ESIYTLALAK    50
    SHRTSNDKEL IRFNADYAKI EGELSYRHGT MPLTMFITKK GKQVKVNHLE 100
    QSRLTQYIGH LNVVLFAPED LNIVKGSPQI RRRFIDMELG QISAVYLNDL 150
    AQYQRILKQK NNYLKQLQLG QKKDLTMLEV LNQQFAEYAM KVTDKRAHFI 200
    QELESLAKPI HAGITNDKEA LSLNYLPSLK FDYAQNEAAR LEEIMSILSD 250
    NMQREKERGI SLFGPHRDDI SFDVNGMDAQ TYGSQGQQRT TALSIKLAEI 300
    ELMNIEVGEY PILLLDDVLS ELDDSRQTHL LSTIQHKVQT FVTTTSVDGI 350
    DHEIMNNAKL YRINQGEIIK 370
    Length:370
    Mass (Da):42,415
    Last modified:December 15, 2009 - v1
    Checksum:i2D6471A9483B1368
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001781 Genomic DNA. Translation: ACY09957.1.
    RefSeqiYP_003280963.1. NC_013450.1.

    Genome annotation databases

    EnsemblBacteriaiACY09957; ACY09957; SAAV_0004.
    GeneIDi8612773.
    KEGGisad:SAAV_0004.
    PATRICi32444020. VBIStaAur139507_0004.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001781 Genomic DNA. Translation: ACY09957.1 .
    RefSeqi YP_003280963.1. NC_013450.1.

    3D structure databases

    ProteinModelPortali D0K725.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 681288.SAAV_0004.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACY09957 ; ACY09957 ; SAAV_0004 .
    GeneIDi 8612773.
    KEGGi sad:SAAV_0004.
    PATRICi 32444020. VBIStaAur139507_0004.

    Phylogenomic databases

    eggNOGi COG1195.
    HOGENOMi HOG000269559.
    KOi K03629.
    OMAi HVVFTGH.
    OrthoDBi EOG6HTP3X.

    Enzyme and pathway databases

    BioCyci SAUR681288:GJ8Z-4-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 2 hits.
    HAMAPi MF_00365. RecF.
    InterProi IPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    IPR003395. RecF/RecN/SMC_N.
    [Graphical view ]
    Pfami PF02463. SMC_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 2 hits.
    TIGRFAMsi TIGR00611. recf. 1 hit.
    PROSITEi PS00617. RECF_1. 1 hit.
    PS00618. RECF_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ED98Imported.

    Entry informationi

    Entry nameiD0K725_STAAD
    AccessioniPrimary (citable) accession number: D0K725
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 15, 2009
    Last sequence update: December 15, 2009
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3