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D0K725 (D0K725_STAAD) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA replication and repair protein RecF RuleBase RU000578 HAMAP-Rule MF_00365
Gene names
Name:recF HAMAP-Rule MF_00365 EMBL ACY09957.1
Ordered Locus Names:SAAV_0004 EMBL ACY09957.1
OrganismStaphylococcus aureus (strain ED98) [Complete proteome] [HAMAP] EMBL ACY09957.1
Taxonomic identifier681288 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Staphylococcus ›

Protein attributes

Sequence length370 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity. RuleBase RU000578 HAMAP-Rule MF_00365 SAAS SAAS018078

Subcellular location

Cytoplasm By similarity RuleBase RU000578 HAMAP-Rule MF_00365 SAAS SAAS018078.

Sequence similarities

Belongs to the RecF family. RuleBase RU000578 HAMAP-Rule MF_00365

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding30 – 378ATP By similarity HAMAP-Rule MF_00365

Sequences

Sequence LengthMass (Da)Tools
D0K725 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: 2D6471A9483B1368

FASTA37042,415
        10         20         30         40         50         60 
MKLNTLQLEN YRNYDEVTLK CHPDVNILIG ENAQGKTNLL ESIYTLALAK SHRTSNDKEL 

        70         80         90        100        110        120 
IRFNADYAKI EGELSYRHGT MPLTMFITKK GKQVKVNHLE QSRLTQYIGH LNVVLFAPED 

       130        140        150        160        170        180 
LNIVKGSPQI RRRFIDMELG QISAVYLNDL AQYQRILKQK NNYLKQLQLG QKKDLTMLEV 

       190        200        210        220        230        240 
LNQQFAEYAM KVTDKRAHFI QELESLAKPI HAGITNDKEA LSLNYLPSLK FDYAQNEAAR 

       250        260        270        280        290        300 
LEEIMSILSD NMQREKERGI SLFGPHRDDI SFDVNGMDAQ TYGSQGQQRT TALSIKLAEI 

       310        320        330        340        350        360 
ELMNIEVGEY PILLLDDVLS ELDDSRQTHL LSTIQHKVQT FVTTTSVDGI DHEIMNNAKL 

       370 
YRINQGEIIK

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References

[1]"Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus."
Lowder B.V., Guinane C.M., Ben Zakour N.L., Weinert L.A., Conway-Morris A., Cartwright R.A., Simpson A.J., Rambaut A., Nuebel U., Fitzgerald J.R.
Proc. Natl. Acad. Sci. U.S.A. 106:19545-19550(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ED98 EMBL ACY09957.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001781 Genomic DNA. Translation: ACY09957.1.
RefSeqYP_003280963.1. NC_013450.1.

3D structure databases

ProteinModelPortalD0K725.
ModBaseSearch...

Protein-protein interaction databases

STRING681288.SAAV_0004.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY09957; ACY09957; SAAV_0004.
GeneID8612773.
KEGGsad:SAAV_0004.
PATRIC32444020. VBIStaAur139507_0004.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1195.
HOGENOMHOG000269559.
KOK03629.
OMADMEIGQV.

Enzyme and pathway databases

BioCycSAUR681288:GJ8Z-4-MONOMER.

Family and domain databases

HAMAPMF_00365. RecF.
InterProIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC.
[Graphical view]
PfamPF02463. SMC_N. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00611. recf. 1 hit.
PROSITEPS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0K725_STAAD
AccessionPrimary (citable) accession number: D0K725
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 29, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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