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D0K725

- D0K725_STAAD

UniProt

D0K725 - D0K725_STAAD

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Protein

DNA replication and repair protein RecF

Gene

recF

Organism
Staphylococcus aureus (strain ED98)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.UniRule annotationSAAS annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi30 – 378ATPUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. single-stranded DNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. DNA repair Source: UniProtKB-HAMAP
  2. DNA replication Source: UniProtKB-HAMAP
  3. SOS response Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA repair, DNA replicationUniRule annotation, SOS responseUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, DNA-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciSAUR681288:GJ8Z-4-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA replication and repair protein RecFUniRule annotation
Gene namesi
Name:recFUniRule annotationImported
Ordered Locus Names:SAAV_0004Imported
OrganismiStaphylococcus aureus (strain ED98)Imported
Taxonomic identifieri681288 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcus
ProteomesiUP000002570: Chromosome

Subcellular locationi

Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi681288.SAAV_0004.

Structurei

3D structure databases

ProteinModelPortaliD0K725.
SMRiD0K725. Positions 14-45.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RecF family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1195.
HOGENOMiHOG000269559.
KOiK03629.
OMAiHVVFTGH.
OrthoDBiEOG6HTP3X.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
HAMAPiMF_00365. RecF.
InterProiIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PfamiPF02463. SMC_N. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
TIGRFAMsiTIGR00611. recf. 1 hit.
PROSITEiPS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0K725-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLNTLQLEN YRNYDEVTLK CHPDVNILIG ENAQGKTNLL ESIYTLALAK
60 70 80 90 100
SHRTSNDKEL IRFNADYAKI EGELSYRHGT MPLTMFITKK GKQVKVNHLE
110 120 130 140 150
QSRLTQYIGH LNVVLFAPED LNIVKGSPQI RRRFIDMELG QISAVYLNDL
160 170 180 190 200
AQYQRILKQK NNYLKQLQLG QKKDLTMLEV LNQQFAEYAM KVTDKRAHFI
210 220 230 240 250
QELESLAKPI HAGITNDKEA LSLNYLPSLK FDYAQNEAAR LEEIMSILSD
260 270 280 290 300
NMQREKERGI SLFGPHRDDI SFDVNGMDAQ TYGSQGQQRT TALSIKLAEI
310 320 330 340 350
ELMNIEVGEY PILLLDDVLS ELDDSRQTHL LSTIQHKVQT FVTTTSVDGI
360 370
DHEIMNNAKL YRINQGEIIK
Length:370
Mass (Da):42,415
Last modified:December 15, 2009 - v1
Checksum:i2D6471A9483B1368
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001781 Genomic DNA. Translation: ACY09957.1.
RefSeqiYP_003280963.1. NC_013450.1.

Genome annotation databases

EnsemblBacteriaiACY09957; ACY09957; SAAV_0004.
GeneIDi8612773.
KEGGisad:SAAV_0004.
PATRICi32444020. VBIStaAur139507_0004.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001781 Genomic DNA. Translation: ACY09957.1 .
RefSeqi YP_003280963.1. NC_013450.1.

3D structure databases

ProteinModelPortali D0K725.
SMRi D0K725. Positions 14-45.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 681288.SAAV_0004.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACY09957 ; ACY09957 ; SAAV_0004 .
GeneIDi 8612773.
KEGGi sad:SAAV_0004.
PATRICi 32444020. VBIStaAur139507_0004.

Phylogenomic databases

eggNOGi COG1195.
HOGENOMi HOG000269559.
KOi K03629.
OMAi HVVFTGH.
OrthoDBi EOG6HTP3X.

Enzyme and pathway databases

BioCyci SAUR681288:GJ8Z-4-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
HAMAPi MF_00365. RecF.
InterProi IPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view ]
Pfami PF02463. SMC_N. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 2 hits.
TIGRFAMsi TIGR00611. recf. 1 hit.
PROSITEi PS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ED98Imported.

Entry informationi

Entry nameiD0K725_STAAD
AccessioniPrimary (citable) accession number: D0K725
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: November 26, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3