D0K4Y9 (D0K4Y9_STAAD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
2-oxoglutarate dehydrogenase E1 component HAMAP MF_01169
EC=1.2.4.2 HAMAP MF_01169

Alternative name(s):
Alpha-ketoglutarate dehydrogenase HAMAP MF_01169

Gene names

Name:	sucA EMBL ACY11299.1
Synonyms:	odhA HAMAP MF_01169
Ordered Locus Names:	SAAV_1397

Organism

Staphylococcus aureus (strain ED98) [Complete proteome] [HAMAP]

Taxonomic identifier

681288 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Staphylococcus

Protein attributes

Sequence length	932 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO2. It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) By similarity. SAAS SAAS011603 HAMAP MF_01169
Catalytic activity	2-oxoglutarate + [dihydrolipoyllysine-residue succinyltransferase] lipoyllysine = [dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine + CO2. SAAS SAAS011603 HAMAP MF_01169
Cofactor	Thiamine pyrophosphate By similarity. HAMAP MF_01169 SAAS SAAS023784
Subunit structure	Homodimer By similarity. HAMAP MF_01169 SAAS SAAS011603
Sequence similarities	Belongs to the alpha-ketoglutarate dehydrogenase family. HAMAP MF_01169

Ontologies

Keywords
Biological process	Glycolysis SAAS SAAS011603 HAMAP MF_01169
Ligand	Thiamine pyrophosphate SAAS SAAS001017 HAMAP MF_01169
Molecular function	Oxidoreductase SAAS SAAS023784 HAMAP MF_01169
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycolysis Inferred from electronic annotation. Source: HAMAP tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular function	oxoglutarate dehydrogenase (succinyl-transferring) activity Inferred from electronic annotation. Source: HAMAP thiamine pyrophosphate binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D0K4Y9 [UniParc]. Last modified December 15, 2009. Version 1. Checksum: F671CE1A65ADAF6D	FASTA	932	105,357
	10 20 30 40 50 60 MTNERKEVSE APVNFGANLG LMLDLYDDFL QDPSSVPEDL QVLFSTIKND DSIVPALKST 70 80 90 100 110 120 SSQNSDGTIK RVMRLIDNIR QYGHLKADIY PVNPPKRKHV PKLEIEDFDL DQQTLEGISA 130 140 150 160 170 180 GIVSDHFADI YDNAYEAILR MEKRYKGPIA FEYTHINNNT ERGWLKRRIE TPYKVTLNNN 190 200 210 220 230 240 EKRALFKQLA YVEGFEKYLH KNFVGAKRFS IEGVDALVPM LQRTITIAAK EGIKNIQIGM 250 260 270 280 290 300 AHRGRLNVLT HVLEKPYEMM ISEFMHTDPM KFLPEDGSLQ LTAGWTGDVK YHLGGIKTTD 310 320 330 340 350 360 SYGTMQRIAL ANNPSHLEIV APVVEGRTRA AQDDTQRAGA PTTDHHKAMP IIIHGDAAYP 370 380 390 400 410 420 GQGINFETMN LGNLKGYSTG GSLHIITNNR IGFTTEPIDA RSTTYSTDVA KGYDVPIFHV 430 440 450 460 470 480 NADDVEATIE AIDIAMEFRK EFHKDVVIDL VGYRRFGHNE MDEPSITNPV PYQNIRKHDS 490 500 510 520 530 540 VEYVFGKKLV NEGVISEDEM HSFIEQVQKE LRQAHDKINK ADKMDNPDME KPAELALPLQ 550 560 570 580 590 600 ADEQSFTFDH LKEINDALLT YPDGFNILKK LNKVLEKRHE PFNKEDGLVD WAQAEQLAFA 610 620 630 640 650 660 TILQDGTPIR LTGQDSERGT FSHRHAVLHD EQTGETYTPL HHVPDQKATF DIHNSPLSEA 670 680 690 700 710 720 AVVGFEYGYN VENKKSFNIW EAQYGDFANM SQMIFDNFLF SSRSKWGERS GLTLFLPHAY 730 740 750 760 770 780 EGQGPEHSSA RLERFLQLAA ENNCTVVNLS SSSNYFHLLR AQAASLDSEQ MRPLVVMSPK 790 800 810 820 830 840 SLLRNKTVAK PIDEFTSGGF EPILTESYQA DKVTKVILAT GKMFIDLKEA LAKNPDESVL 850 860 870 880 890 900 LVAIERLYPF PEEEIEALLA QLPNLEEVSW VQEEPKNQGA WLYVYPYVKV LVADKYDLSY 910 920 930 HGRIQRAAPA EGDGEIHKLV QNKIIENALK NN

References

[1]

"Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus." Lowder B.V., Guinane C.M., Ben Zakour N.L., Weinert L.A., Conway-Morris A., Cartwright R.A., Simpson A.J., Rambaut A., Nubel U., Fitzgerald J.R. Proc. Natl. Acad. Sci. U.S.A. 106:19545-19550(2009) [PubMed: 19884497] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001781 Genomic DNA. Translation: ACY11299.1.
RefSeq	YP_003282305.1. NC_013450.1.
3D structure databases
ProteinModelPortal	D0K4Y9.
ModBase	Search...
Protein-protein interaction databases
STRING	D0K4Y9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBSTAT00000057177; EBSTAP00000054250; EBSTAG00000055400.
GeneID	8614144.
GenomeReviews	Gene locus SAAV_1397 in contig CP001781_GR.
KEGG	sad:SAAV_1397.
PATRIC	32446841. VBIStaAur139507_1395.
Organism-specific databases
CMR	Search...
Phylogenomic databases
GeneTree	EBGT00050000025516.
OMA	EGDEPAF.
Family and domain databases
HAMAP	MF_01169. SucA_OdhA. [Tree]
InterPro	IPR011603. 2oxoglutarate_DH_E1. IPR023784. 2oxoglutarate_DH_E1_bac. IPR001017. DH_E1. IPR005475. Transketolase-like_Pyr-bd. [Graphical view]
KO	K00164.
PANTHER	PTHR23152. 2oxoglutarate_DH_E1. 1 hit.
Pfam	PF00676. E1_dh. 1 hit. PF02779. Transket_pyr. 1 hit. [Graphical view]
PIRSF	PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
TIGRFAMs	TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D0K4Y9_STAAD

Accession

Primary (citable) accession number: D0K4Y9

Entry history

Integrated into UniProtKB/TrEMBL:	December 15, 2009
Last sequence update:	December 15, 2009
Last modified:	December 14, 2011
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)