Skip Header

Contribute Send feedback
Read comments (?) or add your own

D0K3M5 (D0K3M5_STAAD) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Ornithine aminotransferase HAMAP-Rule MF_01689
Short name=OAT HAMAP-Rule MF_01689
EC=2.6.1.13 HAMAP-Rule MF_01689
Alternative name(s):
Ornithine--oxo-acid aminotransferase HAMAP-Rule MF_01689
Gene names
Name:rocD HAMAP-Rule MF_01689 EMBL ACY10835.1
Ordered Locus Names:SAAV_0918 EMBL ACY10835.1
OrganismStaphylococcus aureus (strain ED98) [Complete proteome] [HAMAP] EMBL ACY10835.1
Taxonomic identifier681288 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Staphylococcus ›

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of ornithine to glutamate semialdehyde By similarity. HAMAP-Rule MF_01689

Catalytic activity

L-ornithine + a 2-oxo acid = L-glutamate 5-semialdehyde + an L-amino acid. HAMAP-Rule MF_01689

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01689

Pathway

Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-ornithine: step 1/1. HAMAP-Rule MF_01689

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01689.

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. OAT subfamily. HAMAP-Rule MF_01689

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Modified residue2551N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01689

Sequences

Sequence LengthMass (Da)Tools
D0K3M5 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: 37CCCCDC9840CCF3

FASTA39643,418
        10         20         30         40         50         60 
MTKSEKIIEL TNHYGAHNYL PLPIVISEAE GVWVKDPEGN KYMDMLSAYS AVNQGHRHPK 

        70         80         90        100        110        120 
IIQALKDQAD KVTLVSRAFH SDNLGEWYEK ICKLAGKDKA LPMNTGAEAV ETALKAARRW 

       130        140        150        160        170        180 
AYDVKGIEPN KAEIIAFNGN FHGRTMAPVS LSSEAEYQRG YGPLLDGFRK VDFGDVDALK 

       190        200        210        220        230        240 
AAINENTAAV LVEPIQGEAG INIPPEGYLK AIRELCDEHN VLFIADEIQA GLGRSGKLFA 

       250        260        270        280        290        300 
TDWDNVKPDV YILGKALGGG VFPISVVLAD KEVLDVFTPG SHGSTFGGNP LACAASIAAL 

       310        320        330        340        350        360 
DVIVDEDLPG RSLELGDYFK EQLKQIDHPS IKEVRGRGLF IGVELNESAR PYCEALKEEG 

       370        380        390 
LLCKETHDTV IRFAPPLIIT KEELDLALEK IRHVFQ

« Hide

References

[1]"Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus."
Lowder B.V., Guinane C.M., Ben Zakour N.L., Weinert L.A., Conway-Morris A., Cartwright R.A., Simpson A.J., Rambaut A., Nuebel U., Fitzgerald J.R.
Proc. Natl. Acad. Sci. U.S.A. 106:19545-19550(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ED98 EMBL ACY10835.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001781 Genomic DNA. Translation: ACY10835.1.
RefSeqYP_003281841.1. NC_013450.1.

3D structure databases

ProteinModelPortalD0K3M5.
SMRD0K3M5. Positions 5-395.
ModBaseSearch...

Protein-protein interaction databases

STRING681288.SAAV_0918.
D0K3M5.

Proteomic databases

PRIDED0K3M5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY10835; ACY10835; SAAV_0918.
GeneID8613676.
KEGGsad:SAAV_0918.
PATRIC32445884. VBIStaAur139507_0920.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG4992.
HOGENOMHOG000020206.
KOK00819.
OMARSNIVRD.

Enzyme and pathway databases

BioCycSAUR681288:GJ8Z-909-MONOMER.
UniPathwayUPA00098; UER00358.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
HAMAPMF_01107. ArgD_aminotrans_3.
MF_01689. Ornith_aminotrans_3.
InterProIPR005814. Aminotrans_3.
IPR010164. Orn_aminotrans.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR004636. Trfase_AcOrn/SuccOrn_fam.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PTHR11986:SF18. PTHR11986:SF18. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR01885. Orn_aminotrans. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0K3M5_STAAD
AccessionPrimary (citable) accession number: D0K3M5
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info