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D0JRA3

- D0JRA3_YERP1

UniProt

D0JRA3 - D0JRA3_YERP1

Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Yersinia pestis (strain D182038)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (15 Dec 2009)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

    Cofactori

    Binds 1 copper ion per subunit.UniRule annotation
    Binds 1 zinc ion per subunit.UniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Ligandi

    CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

    Enzyme and pathway databases

    BioCyciYPES637385:GLMY-3008-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodCImported
    Ordered Locus Names:YPD8_2957Imported
    OrganismiYersinia pestis (strain D182038)Imported
    Taxonomic identifieri637385 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
    ProteomesiUP000002567: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD0JRA3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    KOiK04565.
    OMAiITETPYG.

    Family and domain databases

    Gene3Di2.60.40.200. 1 hit.
    InterProiIPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view]
    PfamiPF00080. Sod_Cu. 1 hit.
    [Graphical view]
    SUPFAMiSSF49329. SSF49329. 1 hit.
    PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D0JRA3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLSTLLLPV ILYSSATLAA NMAGMNDKAS MNDKASMNDM ASMNGKASMT    50
    VKINESLPQG NGKALGTVTV TETAYGLLFT PHLTGLAPGI HGFHLHEKPS 100
    CAPGMKDGKA VPALAAGGHL DPNKTGVHLG PYNDKGHLGD LPGLVVNADG 150
    TATYPVLAPR LKSLSEVKQH ALMIHAGGDN YSDHPMPLGG GGARMACGVI 200
    E 201
    Length:201
    Mass (Da):20,675
    Last modified:December 15, 2009 - v1
    Checksum:i75D25ABE48BF8DCD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001589 Genomic DNA. Translation: ACY63629.1.
    RefSeqiYP_005510022.1. NC_017160.1.

    Genome annotation databases

    EnsemblBacteriaiACY63629; ACY63629; YPD8_2957.
    GeneIDi12096292.
    KEGGiypx:YPD8_2957.
    PATRICi36770903. VBIYerPes93679_3944.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001589 Genomic DNA. Translation: ACY63629.1 .
    RefSeqi YP_005510022.1. NC_017160.1.

    3D structure databases

    ProteinModelPortali D0JRA3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACY63629 ; ACY63629 ; YPD8_2957 .
    GeneIDi 12096292.
    KEGGi ypx:YPD8_2957.
    PATRICi 36770903. VBIYerPes93679_3944.

    Phylogenomic databases

    KOi K04565.
    OMAi ITETPYG.

    Enzyme and pathway databases

    BioCyci YPES637385:GLMY-3008-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.200. 1 hit.
    InterProi IPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view ]
    Pfami PF00080. Sod_Cu. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49329. SSF49329. 1 hit.
    PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Spatial variation of Yersinia pestis from Yunnan Province of China."
      Zhang Z., Hai R., Song Z., Xia L., Liang Y., Cai H., Liang Y., Shen X., Zhang E., Xu J., Yu D., Yu X.J.
      Am. J. Trop. Med. Hyg. 81:714-717(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: D182038Imported.

    Entry informationi

    Entry nameiD0JRA3_YERP1
    AccessioniPrimary (citable) accession number: D0JRA3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 15, 2009
    Last sequence update: December 15, 2009
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3