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Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Yersinia pestis (strain D182038)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciYPES637385:GLMY-3008-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:YPD8_2957Imported
OrganismiYersinia pestis (strain D182038)Imported
Taxonomic identifieri637385 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
ProteomesiUP000002567: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD0JRA3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04565.
OMAiGKCEPPF.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0JRA3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLSTLLLPV ILYSSATLAA NMAGMNDKAS MNDKASMNDM ASMNGKASMT
60 70 80 90 100
VKINESLPQG NGKALGTVTV TETAYGLLFT PHLTGLAPGI HGFHLHEKPS
110 120 130 140 150
CAPGMKDGKA VPALAAGGHL DPNKTGVHLG PYNDKGHLGD LPGLVVNADG
160 170 180 190 200
TATYPVLAPR LKSLSEVKQH ALMIHAGGDN YSDHPMPLGG GGARMACGVI

E
Length:201
Mass (Da):20,675
Last modified:December 15, 2009 - v1
Checksum:i75D25ABE48BF8DCD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001589 Genomic DNA. Translation: ACY63629.1.
RefSeqiYP_005510022.1. NC_017160.1.

Genome annotation databases

EnsemblBacteriaiACY63629; ACY63629; YPD8_2957.
GeneIDi12096292.
KEGGiypx:YPD8_2957.
PATRICi36770903. VBIYerPes93679_3944.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001589 Genomic DNA. Translation: ACY63629.1.
RefSeqiYP_005510022.1. NC_017160.1.

3D structure databases

ProteinModelPortaliD0JRA3.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY63629; ACY63629; YPD8_2957.
GeneIDi12096292.
KEGGiypx:YPD8_2957.
PATRICi36770903. VBIYerPes93679_3944.

Phylogenomic databases

KOiK04565.
OMAiGKCEPPF.

Enzyme and pathway databases

BioCyciYPES637385:GLMY-3008-MONOMER.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Spatial variation of Yersinia pestis from Yunnan Province of China."
    Zhang Z., Hai R., Song Z., Xia L., Liang Y., Cai H., Liang Y., Shen X., Zhang E., Xu J., Yu D., Yu X.J.
    Am. J. Trop. Med. Hyg. 81:714-717(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D182038Imported.

Entry informationi

Entry nameiD0JRA3_YERP1
AccessioniPrimary (citable) accession number: D0JRA3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: January 7, 2015
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.