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D0JRA3

- D0JRA3_YERP1

UniProt

D0JRA3 - D0JRA3_YERP1

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Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Yersinia pestis (strain D182038)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Binds 1 copper ion per subunit.UniRule annotation
Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciYPES637385:GLMY-3008-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:YPD8_2957Imported
OrganismiYersinia pestis (strain D182038)Imported
Taxonomic identifieri637385 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
ProteomesiUP000002567: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD0JRA3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04565.
OMAiITETPYG.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0JRA3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLSTLLLPV ILYSSATLAA NMAGMNDKAS MNDKASMNDM ASMNGKASMT
60 70 80 90 100
VKINESLPQG NGKALGTVTV TETAYGLLFT PHLTGLAPGI HGFHLHEKPS
110 120 130 140 150
CAPGMKDGKA VPALAAGGHL DPNKTGVHLG PYNDKGHLGD LPGLVVNADG
160 170 180 190 200
TATYPVLAPR LKSLSEVKQH ALMIHAGGDN YSDHPMPLGG GGARMACGVI

E
Length:201
Mass (Da):20,675
Last modified:December 15, 2009 - v1
Checksum:i75D25ABE48BF8DCD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001589 Genomic DNA. Translation: ACY63629.1.
RefSeqiYP_005510022.1. NC_017160.1.

Genome annotation databases

EnsemblBacteriaiACY63629; ACY63629; YPD8_2957.
GeneIDi12096292.
KEGGiypx:YPD8_2957.
PATRICi36770903. VBIYerPes93679_3944.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001589 Genomic DNA. Translation: ACY63629.1 .
RefSeqi YP_005510022.1. NC_017160.1.

3D structure databases

ProteinModelPortali D0JRA3.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACY63629 ; ACY63629 ; YPD8_2957 .
GeneIDi 12096292.
KEGGi ypx:YPD8_2957.
PATRICi 36770903. VBIYerPes93679_3944.

Phylogenomic databases

KOi K04565.
OMAi ITETPYG.

Enzyme and pathway databases

BioCyci YPES637385:GLMY-3008-MONOMER.

Family and domain databases

Gene3Di 2.60.40.200. 1 hit.
InterProi IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view ]
Pfami PF00080. Sod_Cu. 1 hit.
[Graphical view ]
SUPFAMi SSF49329. SSF49329. 1 hit.
PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Spatial variation of Yersinia pestis from Yunnan Province of China."
    Zhang Z., Hai R., Song Z., Xia L., Liang Y., Cai H., Liang Y., Shen X., Zhang E., Xu J., Yu D., Yu X.J.
    Am. J. Trop. Med. Hyg. 81:714-717(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D182038Imported.

Entry informationi

Entry nameiD0JRA3_YERP1
AccessioniPrimary (citable) accession number: D0JRA3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: October 1, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3