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D0JD33 (D0JD33_YERPD) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
30S ribosomal protein S7 HAMAP-Rule MF_00480
Gene names
Name:rpsG HAMAP-Rule MF_00480 EMBL ACY57084.1
Ordered Locus Names:YPD4_0175 EMBL ACY57084.1
OrganismYersinia pestis (strain D106004) [Complete proteome] [HAMAP] EMBL ACY57084.1
Taxonomic identifier637382 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia ›

Protein attributes

Sequence length156 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA By similarity. HAMAP-Rule MF_00480

Subunit structure

Part of the 30S ribosomal subunit. Contacts proteins S9 and S11 By similarity. HAMAP-Rule MF_00480

Sequence similarities

Belongs to the ribosomal protein S7P family. HAMAP-Rule MF_00480 RuleBase RU003619

Sequences

Sequence LengthMass (Da)Tools
D0JD33 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: BA9CE63CA2052E0F

FASTA15617,606
        10         20         30         40         50         60 
MPRRRVIGQR KILPDPKFGS ELLAKFVNIL MVDGKKSTAE AIVYTALETL AQRSGKDFLE 

        70         80         90        100        110        120 
AFEVALDNVR PTVEVKSRRV GGSTYQVPVE VRPVRRNALA MRWIVDAARK RGDKSMALRL 

       130        140        150 
ANELSDAAEN KGSAVKKRED VHRMAEANKA FAHYRW

« Hide

References

[1]"Spatial variation of Yersinia pestis from Yunnan Province of China."
Zhang Z., Hai R., Song Z., Xia L., Liang Y., Cai H., Liang Y., Shen X., Zhang E., Xu J., Yu D., Yu X.J.
Am. J. Trop. Med. Hyg. 81:714-717(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: D106004 EMBL ACY57084.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001585 Genomic DNA. Translation: ACY57084.1.
RefSeqYP_005503387.1. NC_017154.1.

3D structure databases

ProteinModelPortalD0JD33.
SMRD0JD33. Positions 3-154.
ModBaseSearch...

Proteomic databases

PRIDED0JD33.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY57084; ACY57084; YPD4_0175.
GeneID12092816.
KEGGypd:YPD4_0175.
PATRIC36753041. VBIYerPes77623_0226.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000039067.
KOK02992.
OMARREKTMT.

Family and domain databases

Gene3D1.10.455.10. 1 hit.
HAMAPMF_00480_B. Ribosomal_S7_B.
InterProIPR000235. Ribosomal_S5/S7.
IPR005717. Ribosomal_S7_bac/org-type.
IPR020606. Ribosomal_S7_CS.
IPR023798. Ribosomal_S7_dom.
[Graphical view]
PANTHERPTHR11205. PTHR11205. 1 hit.
PTHR11205:SF13. PTHR11205:SF13. 1 hit.
PfamPF00177. Ribosomal_S7. 1 hit.
[Graphical view]
PIRSFPIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
SUPFAMSSF47973. Ribosomal_S7. 1 hit.
TIGRFAMsTIGR01029. rpsG_bact. 1 hit.
PROSITEPS00052. RIBOSOMAL_S7. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0JD33_YERPD
AccessionPrimary (citable) accession number: D0JD33
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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