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D0JAF1 (D0JAF1_BLASB) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length87 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome By similarity. HAMAP-Rule MF_01343

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA By similarity. HAMAP-Rule MF_01343 RuleBase RU004524

Subunit structure

Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA By similarity. HAMAP-Rule MF_01343

Sequence similarities

Belongs to the ribosomal protein S15P family. HAMAP-Rule MF_01343 RuleBase RU003919

Sequences

Sequence LengthMass (Da)Tools
D0JAF1 [UniParc].

Last modified December 15, 2009. Version 1.
Checksum: 9811B0FDA0E8BDB8

FASTA8710,241
        10         20         30         40         50         60 
MTAEKKKEIF KTYGTSVYDT GSSKAQVALF TYRINYLSNH LKNNKKDFNT ERALVKLVGK 

        70         80 
RKKLLKYIEK RDINSYKNII KHLGLRK

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References

[1]"Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica."
Lopez-Sanchez M.J., Neef A., Pereto J., Patino-Navarrete R., Pignatelli M., Latorre A., Moya A.
PLoS Genet. 5:E1000721-E1000721(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bge.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001487 Genomic DNA. Translation: ACY40139.1.
RefSeqYP_003283749.1. NC_013454.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING331104.BLBBGE_108.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY40139; ACY40139; BLBBGE_108.
GeneID8554667.
KEGGbbl:BLBBGE_108.
PATRIC31958846. VBIBlaSp132937_0103.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0184.
HOGENOMHOG000040097.
KOK02956.
OMALKMVSRR.

Enzyme and pathway databases

BioCycBSP331104:GH6K-112-MONOMER.

Family and domain databases

Gene3D1.10.287.10. 1 hit.
HAMAPMF_01343_B. Ribosomal_S15_S13e_B.
InterProIPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR009068. S15_NS1_RNA-bd.
[Graphical view]
PANTHERPTHR23321:SF10. PTHR23321:SF10. 1 hit.
PfamPF00312. Ribosomal_S15. 1 hit.
[Graphical view]
SUPFAMSSF47060. S15/NS1_bind. 1 hit.
TIGRFAMsTIGR00952. S15_bact. 1 hit.
PROSITEPS00362. RIBOSOMAL_S15. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0JAF1_BLASB
AccessionPrimary (citable) accession number: D0JAF1
Entry history
Integrated into UniProtKB/TrEMBL: December 15, 2009
Last sequence update: December 15, 2009
Last modified: May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info