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D0FU90 (D0FU90_ERWPE) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:sdhA EMBL CAX56219.1
Ordered Locus Names:EpC_24400 EMBL CAX56219.1
OrganismErwinia pyrifoliae (strain Ep1/96) [Complete proteome] [HAMAP]
Taxonomic identifier634499 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeErwinia

Protein attributes

Sequence length588 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D0FU90 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: E3A2558D9DA29ABC

FASTA58864,363
        10         20         30         40         50         60 
MKLPVREFDA VVIGAGGAGM RAALQISQSG QTCALLSKVF PTRSHTVSAQ GGITVALGNT 

        70         80         90        100        110        120 
HEDNWEWHMY DTVKGSDYIG DQDAIEYMCK TGPEAILELE HMGLPFSRLD DGRIYQRPFG 

       130        140        150        160        170        180 
GQSKNFGGEQ AARTAAAADR TGHALLHTLY QQNLKNKTTI FSEWYALDLV KNVDGAIVGC 

       190        200        210        220        230        240 
TALNIEDGEV VYFKARATVL ATGGAGRIYQ STTNAHINTG DGVGMALRAG VPVQDMEMWQ 

       250        260        270        280        290        300 
FHPTGIAGAG VLVTEGCRGE GGYLLNKHGE RFMERYAPNA KDLAGRDVVA RSIMIEIREG 

       310        320        330        340        350        360 
RGCDGPWGPH AKLKLDHLGK EVLESRLPGI LELSRTFAHV DPVKEPIPVI PTCHYMMGGI 

       370        380        390        400        410        420 
PTKVSGQALT VNEQGEDVVI PGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGLHLQ 

       430        440        450        460        470        480 
ESIQQQGALL DATEEEIEAS LTRLNRWNNN INGEDPAELR KALQACMQHN FSVFREGDAM 

       490        500        510        520        530        540 
AKGLAELKVL RERLKNARLD DRSSDFNTQR VECLELDNLM ETAYATAVSA NFRTESRGAH 

       550        560        570        580 
SRFDYPERDD ANWLCHSLYL PQSESMTRRE VNMQPKLRAA FPPKARTY 

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References

[1]"Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae."
Kube M., Migdoll A.M., Gehring I., Heitmann K., Mayer Y., Kuhl H., Knaust F., Geider K., Reinhardt R.
BMC Genomics 11:393-393(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ep1/96 EMBL CAX56219.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP236842 Genomic DNA. Translation: CAX56219.1.
RefSeqYP_002649436.1. NC_012214.1.

3D structure databases

ProteinModelPortalD0FU90.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING634499.EpC_24400.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAX56219; CAX56219; EpC_24400.
GeneID8540602.
KEGGepy:EpC_24400.
PATRIC20423074. VBIErwPyr67807_2422.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000160475.
KOK00239.
OMAINVFGKR.
OrthoDBEOG6M3PC4.

Enzyme and pathway databases

BioCycEPYR634499:GJIP-2510-MONOMER.

Family and domain databases

Gene3D1.20.58.100. 1 hit.
3.90.700.10. 1 hit.
InterProIPR003953. FAD_bind_dom.
IPR013027. FAD_pyr_nucl-diS_OxRdtase.
IPR003952. FRD_SDH_FAD_BS.
IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
IPR027477. Succ_DH/fumarate_Rdtase_cat.
IPR011281. Succ_DH_flav_su_fwd.
IPR014006. Succ_Dhase_FrdA_Gneg.
[Graphical view]
PfamPF00890. FAD_binding_2. 1 hit.
PF02910. Succ_DH_flav_C. 1 hit.
[Graphical view]
PRINTSPR00368. FADPNR.
SUPFAMSSF46977. SSF46977. 1 hit.
SSF56425. SSF56425. 1 hit.
TIGRFAMsTIGR01816. sdhA_forward. 1 hit.
TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITEPS00504. FRD_SDH_FAD_BINDING. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0FU90_ERWPE
AccessionPrimary (citable) accession number: D0FU90
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: November 13, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)