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D0C9L6 (D0C9L6_ACIBA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length193 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis By similarity. HAMAP-Rule MF_00083

Catalytic activity

N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA. HAMAP-Rule MF_00083 RuleBase RU000673

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00083

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00083.

Sequence similarities

Belongs to the PTH family. HAMAP-Rule MF_00083 RuleBase RU004320

Ontologies

Keywords
   Cellular componentCytoplasm HAMAP-Rule MF_00083
   Molecular functionHydrolase HAMAP-Rule MF_00083 RuleBase RU000673 EMBL EEX03935.1
   Technical term3D-structure PDB 4FOP PDB 4FOT PDB 4HOY PDB 4IKO
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionaminoacyl-tRNA hydrolase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D0C9L6 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: 08025EF679FC28FF

FASTA19320,938
        10         20         30         40         50         60 
MSNISLIVGL GNPGSEYAQT RHNAGFWFVE QLADKYGITL KNDPKFHGIS GRGNIEGHDV 

        70         80         90        100        110        120 
RLLLPMTYMN RSGQSVVPFS KFYQIAPEAI LIAHDELDMN PGVIRLKTGG GHGGHNGLRD 

       130        140        150        160        170        180 
IVPHIGPNFH RLRIGIGHPG SKERVSGHVL GKAPSNEQSL MDGAIDHALS KVKLLVQGQV 

       190 
PQAMNQINAY KPA

« Hide

References

[1]"The Genome Sequence of Acinetobacter baumannii strain ATCC 19606."
The Broad Institute Genome Sequencing Platform
Ward D., Feldgarden M., Earl A., Young S.K., Zeng Q., Koehrsen M., Alvarado L., Berlin A., Bochicchio J., Borenstein D., Chapman S., Chen Z., Engels R., Freedman E., Gellesch M., Goldberg J., Griggs A., Gujja S. expand/collapse author list , Heilman E., Heiman D., Hepburn T., Howarth C., Jen D., Larson L., Lewis B., Mehta T., Park D., Pearson M., Roberts A., Saif S., Shea T., Shenoy N., Sisk P., Stolte C., Sykes S., Thomson T., Walk T., White J., Yandava C., Peleg A., Haas B., Nusbaum C., Birren B.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 19606 EMBL EEX03935.1.
[2]"Crystal structure of Peptidyl- tRNA Hydrolase from Acinetobacter baumannii at 2.20 A resolution."
Yamini S., Kaushik S., Sinha M., Kaur P., Sharma S., Singh T.P.
Submitted (JUN-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS).
[3]"Crystal Structure of Peptidyl-tRNA hydrolase from Acinetobacter baumannii at 1.86 A resolution."
Kaushik S., Kumar S., Singh N., Sinha M., Kaur P., Sharma S., Singh T.P.
Submitted (JUN-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.86 ANGSTROMS).
[4]"Crystal structure of Peptidyl- tRNA Hydrolase from Acinetobacter baumannii at 1.78 A resolution."
Yamini S., Kaushik S., Sinha M., Kaur P., Sharma S., Singh T.P.
Submitted (OCT-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.78 ANGSTROMS).
[5]"Structure of Peptidyl- tRNA Hydrolase from Acinetobacter baumannii at 1.90 A resolution."
Yamini S., Kaushik S., Sinha M., Kaur P., Sharma S., Singh T.P.
Submitted (DEC-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		GG704573 Genomic DNA. Translation: EEX03935.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4FOPX-ray1.86A1-193[»]
4FOTX-ray2.20A1-193[»]
4HOYX-ray1.78A1-193[»]
4IKOX-ray1.90A1-193[»]
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEEX03935; EEX03935; HMPREF0010_01329.
PATRIC24332185. VBIAciBau3967_1302.

Family and domain databases

Gene3D3.40.50.1470. 1 hit.
HAMAPMF_00083. Pept_tRNA_hydro_bact.
InterProIPR001328. Pept_tRNA_hydro.
IPR018171. Pept_tRNA_hydro_CS.
[Graphical view]
PANTHERPTHR17224. PTHR17224. 1 hit.
PfamPF01195. Pept_tRNA_hydro. 1 hit.
[Graphical view]
SUPFAMSSF53178. Pept_tRNA_hydro. 1 hit.
TIGRFAMsTIGR00447. pth. 1 hit.
PROSITEPS01195. PEPT_TRNA_HYDROL_1. 1 hit.
PS01196. PEPT_TRNA_HYDROL_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD0C9L6_ACIBA
AccessionPrimary (citable) accession number: D0C9L6
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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