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D0C9L6

- D0C9L6_ACIBA

UniProt

D0C9L6 - D0C9L6_ACIBA

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Protein

Peptidyl-tRNA hydrolase

Gene

pth

Organism
Acinetobacter baumannii ATCC 19606 = CIP 70.34
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.UniRule annotation

Catalytic activityi

N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei22 – 221PhosphateImported
Binding sitei116 – 1161PhosphateImported

GO - Molecular functioni

  1. aminoacyl-tRNA hydrolase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Peptidyl-tRNA hydrolaseUniRule annotation (EC:3.1.1.29UniRule annotation)
Short name:
PTHUniRule annotation
Gene namesi
Name:pthUniRule annotationImported
ORF Names:DJ41_883Imported, F911_03144Imported, HMPREF0010_01329Imported
OrganismiAcinetobacter baumannii ATCC 19606 = CIP 70.34Imported
Taxonomic identifieri575584 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesMoraxellaceaeAcinetobacterAcinetobacter calcoaceticus/baumannii complex

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Monomer.UniRule annotation

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3WH4X-ray1.36A1-193[»]
4FOPX-ray1.86A1-193[»]
4FOTX-ray2.20A1-193[»]
4HOYX-ray1.78A1-193[»]
4IKOX-ray1.90A1-193[»]
4JWKX-ray1.87A1-193[»]
4JX9X-ray1.40A1-193[»]
4JY7X-ray1.90A1-193[»]
4LWQX-ray1.38A1-193[»]
4LWRX-ray1.10A1-193[»]
4OLJX-ray1.49A1-193[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PTH family.UniRule annotation

Family and domain databases

Gene3Di3.40.50.1470. 1 hit.
HAMAPiMF_00083. Pept_tRNA_hydro_bact.
InterProiIPR001328. Pept_tRNA_hydro.
IPR018171. Pept_tRNA_hydro_CS.
[Graphical view]
PANTHERiPTHR17224. PTHR17224. 1 hit.
PfamiPF01195. Pept_tRNA_hydro. 1 hit.
[Graphical view]
SUPFAMiSSF53178. SSF53178. 1 hit.
TIGRFAMsiTIGR00447. pth. 1 hit.
PROSITEiPS01195. PEPT_TRNA_HYDROL_1. 1 hit.
PS01196. PEPT_TRNA_HYDROL_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D0C9L6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSNISLIVGL GNPGSEYAQT RHNAGFWFVE QLADKYGITL KNDPKFHGIS
60 70 80 90 100
GRGNIEGHDV RLLLPMTYMN RSGQSVVPFS KFYQIAPEAI LIAHDELDMN
110 120 130 140 150
PGVIRLKTGG GHGGHNGLRD IVPHIGPNFH RLRIGIGHPG SKERVSGHVL
160 170 180 190
GKAPSNEQSL MDGAIDHALS KVKLLVQGQV PQAMNQINAY KPA
Length:193
Mass (Da):20,938
Last modified:November 24, 2009 - v1
Checksum:i08025EF679FC28FF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG704573 Genomic DNA. Translation: EEX03935.1.
APRG01000016 Genomic DNA. Translation: ENW73725.1.
JMRY01000017 Genomic DNA. Translation: KFC02421.1.

Genome annotation databases

EnsemblBacteriaiEEX03935; EEX03935; HMPREF0010_01329.
ENW73725; ENW73725; F911_03144.
PATRICi24332185. VBIAciBau3967_1302.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG704573 Genomic DNA. Translation: EEX03935.1 .
APRG01000016 Genomic DNA. Translation: ENW73725.1 .
JMRY01000017 Genomic DNA. Translation: KFC02421.1 .

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3WH4 X-ray 1.36 A 1-193 [» ]
4FOP X-ray 1.86 A 1-193 [» ]
4FOT X-ray 2.20 A 1-193 [» ]
4HOY X-ray 1.78 A 1-193 [» ]
4IKO X-ray 1.90 A 1-193 [» ]
4JWK X-ray 1.87 A 1-193 [» ]
4JX9 X-ray 1.40 A 1-193 [» ]
4JY7 X-ray 1.90 A 1-193 [» ]
4LWQ X-ray 1.38 A 1-193 [» ]
4LWR X-ray 1.10 A 1-193 [» ]
4OLJ X-ray 1.49 A 1-193 [» ]
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai EEX03935 ; EEX03935 ; HMPREF0010_01329 .
ENW73725 ; ENW73725 ; F911_03144 .
PATRICi 24332185. VBIAciBau3967_1302.

Family and domain databases

Gene3Di 3.40.50.1470. 1 hit.
HAMAPi MF_00083. Pept_tRNA_hydro_bact.
InterProi IPR001328. Pept_tRNA_hydro.
IPR018171. Pept_tRNA_hydro_CS.
[Graphical view ]
PANTHERi PTHR17224. PTHR17224. 1 hit.
Pfami PF01195. Pept_tRNA_hydro. 1 hit.
[Graphical view ]
SUPFAMi SSF53178. SSF53178. 1 hit.
TIGRFAMsi TIGR00447. pth. 1 hit.
PROSITEi PS01195. PEPT_TRNA_HYDROL_1. 1 hit.
PS01196. PEPT_TRNA_HYDROL_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 19606Imported.
  2. "The mode of inhibitor binding to peptidyl-tRNA hydrolase: binding studies and structure determination of unbound and bound peptidyl-tRNA hydrolase from Acinetobacter baumannii."
    Kaushik S., Singh N., Yamini S., Singh A., Sinha M., Arora A., Kaur P., Sharma S., Singh T.P.
    PLoS ONE 8:e67547-e67547(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS).
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CIP 70.34Imported.
  4. "Crystal structure of native peptidyl t-RNA hydrolase from Acinetobacter baumannii at 1.38A resolution."
    Kaushik S., Singh N., Sinha M., Kaur P., Sharma S., Singh T.P.
    Submitted (JUL-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.38 ANGSTROMS).
  5. "Crystal structure of the ternary complex of peptidyl tRNA hydrolase from Acinetobacter baumannii with cytosine arabinoside and phosphate ion at 1.1A resolution."
    Kaushik S., Singh N., Sinha M., Kaur P., Sharma S., Singh T.P.
    Submitted (JUL-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.10 ANGSTROMS).
  6. "Crystal structure of peptidyl t-RNA hydrolase from Acinetobacter baumannii in unbound state at 1.36A resolution."
    Kaushik S., Singh N., Sinha M., Kaur P., Sharma S., Singh T.P.
    Submitted (AUG-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.36 ANGSTROMS).
  7. "Crystal structure of Arg119Gln mutant of Peptidyl-tRNA hydrolase from Acinetobacter Baumannii at 1.49 A resolution."
    Sikarwar J., Dube D., Kaushik S., Sinha M., Kaur P., Sharma S., Singh T.P.
    Submitted (JAN-2014) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.49 ANGSTROMS).
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 19606Imported.

Entry informationi

Entry nameiD0C9L6_ACIBA
AccessioniPrimary (citable) accession number: D0C9L6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: October 29, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3