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Protein

Alpha-amylase

Gene

amlB

Organism
Streptomyces scabiei (strain 87.22)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-6527-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Name:amlBImported
Ordered Locus Names:SCAB_66681Imported
OrganismiStreptomyces scabiei (strain 87.22)Imported
Taxonomic identifieri680198 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces
Proteomesi
  • UP000001444 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence analysisAdd
BLAST
Chaini30 – 460431Alpha-amylaseSequence analysisPRO_5003004541Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi680198.SCAB_66681.

Structurei

3D structure databases

ProteinModelPortaliC9ZHE6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini36 – 373338AamyInterPro annotationAdd
BLAST
Domaini382 – 45877Aamy_CInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiCOG0366. LUCA.
HOGENOMiHOG000253313.
KOiK01176.
OMAiRANVQNC.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase/branching_C.
IPR031319. A-amylase_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

C9ZHE6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSRTLSGAL ALAAGASIAL TAPAGSAYAS PPGTKDVTAV LFEWNFASVA
60 70 80 90 100
RECTSTLGPN GYGYVQVSPP AEHIQGAQWW TSYQPVSYRI AGRLGDATAF
110 120 130 140 150
KNMIDTCHAA GVKVVVDTVV NHMSAGSGTG TGGSSYTKYD YPGLYSSFDF
160 170 180 190 200
DDCTATISDY TNRANVQNCE LVTLADLDTG EEYVRSAIAG YMNSLLGYGV
210 220 230 240 250
DGFRIDAAKH IPAADLANIK SRLTNSSVYW KQEAIHGSGE AVQPGEYTGN
260 270 280 290 300
GDVQEFRYAF DLKRVFTNEN LAYLKNYGEG WGYMNSSVAG VFVDNHDTER
310 320 330 340 350
NGSTLSYKDN ATYTLANVFM LAYPYGAPDI NSGYEFSSTD AGPPDNGRVD
360 370 380 390 400
ACWQNGWKCQ HAWPEIMRMV AFRNATRGEA VTDWWDNGSD AIAFGRGGKG
410 420 430 440 450
FVAINHESSG LSRTYRTSLA AGTYCNVQNN TTVTVNGSGQ FTATLGAHTA
460
LALYAGKSSC
Length:460
Mass (Da):49,244
Last modified:November 24, 2009 - v1
Checksum:i3F1B6F4295B7E3F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG73668.1.
RefSeqiWP_013004224.1. NC_013929.1.

Genome annotation databases

EnsemblBacteriaiCBG73668; CBG73668; SCAB_66681.
GeneIDi24306434.
KEGGiscb:SCAB_66681.
PATRICi35329026. VBIStrSca144334_6563.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG73668.1.
RefSeqiWP_013004224.1. NC_013929.1.

3D structure databases

ProteinModelPortaliC9ZHE6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi680198.SCAB_66681.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBG73668; CBG73668; SCAB_66681.
GeneIDi24306434.
KEGGiscb:SCAB_66681.
PATRICi35329026. VBIStrSca144334_6563.

Phylogenomic databases

eggNOGiCOG0366. LUCA.
HOGENOMiHOG000253313.
KOiK01176.
OMAiRANVQNC.

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-6527-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase/branching_C.
IPR031319. A-amylase_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions."
    Bignell D.R., Seipke R.F., Huguet-Tapia J.C., Chambers A.H., Parry R.J., Loria R.
    Mol. Plant Microbe Interact. 23:161-175(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 87.22Imported.

Entry informationi

Entry nameiC9ZHE6_STRSW
AccessioniPrimary (citable) accession number: C9ZHE6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: July 6, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.