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Protein
Submitted name:

Streptomyces scabiei 87.22 complete genome

Gene

SCAB_18021

Organism
Streptomyces scabies (strain 87.22) (Streptomyces scabiei)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. pyridoxal phosphate binding Source: InterPro
  2. transaminase activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-1710-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Streptomyces scabiei 87.22 complete genomeImported
Gene namesi
Ordered Locus Names:SCAB_18021Imported
OrganismiStreptomyces scabies (strain 87.22) (Streptomyces scabiei)Imported
Taxonomic identifieri680198 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000001444 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliC9ZGG2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000020206.
KOiK00823.
OMAiVAADILC.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

C9ZGG2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDELLGRHK AVLPDWLALY YADPLEITHG EGRHVWDAAG TRYLDFFGGI
60 70 80 90 100
LTTMTAHALP EVTKAVSEQA GRIIHSSTLY LNRPMVELAE RIAQMSGIPD
110 120 130 140 150
ARVFFTTSGT EANDTALMLA TTHRRSNQIL AMRNSYHGRS FSAVGITGNK
160 170 180 190 200
GWSPTSLSPL QTLYVHGGVR TRGPYADLSD ADFITACVAD LEDLLGHGRP
210 220 230 240 250
PAALIAEPVQ GVGGFTSPPD GLYAAFREVL QRHGVLWIAD EVQTGWGRTG
260 270 280 290 300
DNFWGWQAHG QNGPPDILTF AKGIGNGMSI GGVVARSEVM NCLDSNSIST
310 320 330 340 350
FGGTQITMAA GLANLNYLIE HDLQGNARRV GGLLIERLRA ITAQIPEVKE
360 370 380 390 400
VRGRGLMIGI ELVKPGTDEA NPEAASAVLE AARREGLLIG KGGGHNTSAL
410 420
RIAPPLSLTV AEAEEGAEAL ERALRSIR
Length:428
Mass (Da):45,829
Last modified:November 24, 2009 - v1
Checksum:i1AAB0A0F9FDDD07D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG68932.1.
RefSeqiWP_012999656.1. NC_013929.1.
YP_003487497.1. NC_013929.1.

Genome annotation databases

EnsemblBacteriaiCBG68932; CBG68932; SCAB_18021.
KEGGiscb:SCAB_18021.
PATRICi35319300. VBIStrSca144334_1764.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG68932.1.
RefSeqiWP_012999656.1. NC_013929.1.
YP_003487497.1. NC_013929.1.

3D structure databases

ProteinModelPortaliC9ZGG2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBG68932; CBG68932; SCAB_18021.
KEGGiscb:SCAB_18021.
PATRICi35319300. VBIStrSca144334_1764.

Phylogenomic databases

HOGENOMiHOG000020206.
KOiK00823.
OMAiVAADILC.

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-1710-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions."
    Bignell D.R., Seipke R.F., Huguet-Tapia J.C., Chambers A.H., Parry R.J., Loria R.
    Mol. Plant Microbe Interact. 23:161-175(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 87.22Imported.

Entry informationi

Entry nameiC9ZGG2_STRSW
AccessioniPrimary (citable) accession number: C9ZGG2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: April 29, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.