Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C9Z888

- C9Z888_STRSW

UniProt

C9Z888 - C9Z888_STRSW

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Putative DNA ligase

Gene

SCAB_13591

Organism
Streptomyces scabies (strain 87.22) (Streptomyces scabiei)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-1293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligaseImported
Gene namesi
Ordered Locus Names:SCAB_13591Imported
OrganismiStreptomyces scabies (strain 87.22) (Streptomyces scabiei)Imported
Taxonomic identifieri680198 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000001444: Chromosome

Structurei

3D structure databases

ProteinModelPortaliC9Z888.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222508.
KOiK01971.
OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9Z888-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDLPVMPPVK PMLAKSVAKI PPAMHYEAKW DGFRAIVFRD GAEVEIGSRT
60 70 80 90 100
GKTLTRYFPE LVAALRERLP ERCVMDGEVV IVRGGHLDFD ALTERIHPAD
110 120 130 140 150
SRVRMLAETT PASFVAFDML ALNDESLLDV PLTDRRALLE LALSEVTAPV
160 170 180 190 200
HVAPATRDRE LAERWFEQYE GAGLDGVIAK PLDLRYRQDE RAMFKIKHER
210 220 230 240 250
TADVVIAGYR FHKSGPVVGS LLLGLYDAGG ALQHIGVCAA FTMKRRAELV
260 270 280 290 300
AELEPWRLQD VGEHPWAAWA EEAAHDTARL PGAPSRWSAK KDFSWVPLRP
310 320 330 340 350
ERVAEVAYDH MENGVRFRHT ARFRRWRPDR TAESCTYGQL EEPVTYDLAE

ILGPDAGP
Length:358
Mass (Da):40,226
Last modified:November 24, 2009 - v1
Checksum:iD0F55FC1A2A58DF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG68516.1.
RefSeqiWP_012999246.1. NC_013929.1.
YP_003487086.1. NC_013929.1.

Genome annotation databases

EnsemblBacteriaiCBG68516; CBG68516; SCAB_13591.
GeneIDi8838369.
KEGGiscb:SCAB_13591.
PATRICi35318448. VBIStrSca144334_1339.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG68516.1 .
RefSeqi WP_012999246.1. NC_013929.1.
YP_003487086.1. NC_013929.1.

3D structure databases

ProteinModelPortali C9Z888.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBG68516 ; CBG68516 ; SCAB_13591 .
GeneIDi 8838369.
KEGGi scb:SCAB_13591.
PATRICi 35318448. VBIStrSca144334_1339.

Phylogenomic databases

HOGENOMi HOG000222508.
KOi K01971.
OMAi HERTADC.

Enzyme and pathway databases

BioCyci SSCA680198:GJ76-1293-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions."
    Bignell D.R., Seipke R.F., Huguet-Tapia J.C., Chambers A.H., Parry R.J., Loria R.
    Mol. Plant Microbe Interact. 23:161-175(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 87.22Imported.

Entry informationi

Entry nameiC9Z888_STRSW
AccessioniPrimary (citable) accession number: C9Z888
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: October 29, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3