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C9Z888

- C9Z888_STRSW

UniProt

C9Z888 - C9Z888_STRSW

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Protein
Submitted name: Putative DNA ligase
Gene
SCAB_13591
Organism
Streptomyces scabies (strain 87.22) (Streptomyces scabiei)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-1293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligaseImported
Gene namesi
Ordered Locus Names:SCAB_13591Imported
OrganismiStreptomyces scabies (strain 87.22) (Streptomyces scabiei)Imported
Taxonomic identifieri680198 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000001444: Chromosome

Structurei

3D structure databases

ProteinModelPortaliC9Z888.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222508.
KOiK01971.
OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9Z888-1 [UniParc]FASTAAdd to Basket

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MDLPVMPPVK PMLAKSVAKI PPAMHYEAKW DGFRAIVFRD GAEVEIGSRT    50
GKTLTRYFPE LVAALRERLP ERCVMDGEVV IVRGGHLDFD ALTERIHPAD 100
SRVRMLAETT PASFVAFDML ALNDESLLDV PLTDRRALLE LALSEVTAPV 150
HVAPATRDRE LAERWFEQYE GAGLDGVIAK PLDLRYRQDE RAMFKIKHER 200
TADVVIAGYR FHKSGPVVGS LLLGLYDAGG ALQHIGVCAA FTMKRRAELV 250
AELEPWRLQD VGEHPWAAWA EEAAHDTARL PGAPSRWSAK KDFSWVPLRP 300
ERVAEVAYDH MENGVRFRHT ARFRRWRPDR TAESCTYGQL EEPVTYDLAE 350
ILGPDAGP 358
Length:358
Mass (Da):40,226
Last modified:November 24, 2009 - v1
Checksum:iD0F55FC1A2A58DF2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN554889 Genomic DNA. Translation: CBG68516.1.
RefSeqiYP_003487086.1. NC_013929.1.

Genome annotation databases

EnsemblBacteriaiCBG68516; CBG68516; SCAB_13591.
GeneIDi8838369.
KEGGiscb:SCAB_13591.
PATRICi35318448. VBIStrSca144334_1339.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN554889 Genomic DNA. Translation: CBG68516.1 .
RefSeqi YP_003487086.1. NC_013929.1.

3D structure databases

ProteinModelPortali C9Z888.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBG68516 ; CBG68516 ; SCAB_13591 .
GeneIDi 8838369.
KEGGi scb:SCAB_13591.
PATRICi 35318448. VBIStrSca144334_1339.

Phylogenomic databases

HOGENOMi HOG000222508.
KOi K01971.
OMAi HERTADC.

Enzyme and pathway databases

BioCyci SSCA680198:GJ76-1293-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions."
    Bignell D.R., Seipke R.F., Huguet-Tapia J.C., Chambers A.H., Parry R.J., Loria R.
    Mol. Plant Microbe Interact. 23:161-175(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 87.22Imported.

Entry informationi

Entry nameiC9Z888_STRSW
AccessioniPrimary (citable) accession number: C9Z888
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 14, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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