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C9Z888 (C9Z888_STRSW) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative DNA ligase EMBL CBG68516.1
Gene names
Ordered Locus Names:SCAB_13591
OrganismStreptomyces scabies (strain 87.22) (Streptomyces scabiei) [Complete proteome] [HAMAP]
Taxonomic identifier680198 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptomycineae › Streptomycetaceae › Streptomyces ›

Protein attributes

Sequence length358 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CBG68516.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C9Z888 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: D0F55FC1A2A58DF2

FASTA35840,226
        10         20         30         40         50         60 
MDLPVMPPVK PMLAKSVAKI PPAMHYEAKW DGFRAIVFRD GAEVEIGSRT GKTLTRYFPE 

        70         80         90        100        110        120 
LVAALRERLP ERCVMDGEVV IVRGGHLDFD ALTERIHPAD SRVRMLAETT PASFVAFDML 

       130        140        150        160        170        180 
ALNDESLLDV PLTDRRALLE LALSEVTAPV HVAPATRDRE LAERWFEQYE GAGLDGVIAK 

       190        200        210        220        230        240 
PLDLRYRQDE RAMFKIKHER TADVVIAGYR FHKSGPVVGS LLLGLYDAGG ALQHIGVCAA 

       250        260        270        280        290        300 
FTMKRRAELV AELEPWRLQD VGEHPWAAWA EEAAHDTARL PGAPSRWSAK KDFSWVPLRP 

       310        320        330        340        350 
ERVAEVAYDH MENGVRFRHT ARFRRWRPDR TAESCTYGQL EEPVTYDLAE ILGPDAGP

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References

[1]"The first genome sequence of a pathogenic streptomycete, Streptomyces scabies."
Yaxley A., Bentley S.D., Loria R.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 87.22.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FN554889 Genomic DNA. Translation: CBG68516.1.
RefSeqYP_003487086.1. NC_013929.1.

3D structure databases

ProteinModelPortalC9Z888.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBG68516; CBG68516; SCAB_13591.
GeneID8838369.
KEGGscb:SCAB_13591.
PATRIC35318448. VBIStrSca144334_1339.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222508.
KOK01971.
OMAFKIKHER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC9Z888_STRSW
AccessionPrimary (citable) accession number: C9Z888
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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