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Protein
Submitted name:

Streptomyces scabiei 87.22 complete genome

Gene

SCAB_25641

Organism
Streptomyces scabies (strain 87.22) (Streptomyces scabiei)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-2456-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Streptomyces scabiei 87.22 complete genomeImported
Gene namesi
Ordered Locus Names:SCAB_25641Imported
OrganismiStreptomyces scabies (strain 87.22) (Streptomyces scabiei)Imported
Taxonomic identifieri680198 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000001444 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliC9Z277.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000031216.
KOiK05349.
OMAiIKGKRTY.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.20.20.300. 1 hit.
3.40.50.1700. 2 hits.
InterProiIPR008999. Actin_cross-linking.
IPR005084. CMB_fam6.
IPR026891. Fn3-like.
IPR008979. Galactose-bd-like.
IPR026892. Glyco_hydro_3.
IPR002772. Glyco_hydro_3_C.
IPR001764. Glyco_hydro_3_N.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR30620. PTHR30620. 1 hit.
PfamiPF03422. CBM_6. 1 hit.
PF14310. Fn3-like. 1 hit.
PF00933. Glyco_hydro_3. 1 hit.
PF01915. Glyco_hydro_3_C. 1 hit.
[Graphical view]
PRINTSiPR00133. GLHYDRLASE3.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF50405. SSF50405. 1 hit.
SSF51445. SSF51445. 1 hit.
SSF52279. SSF52279. 2 hits.

Sequencei

Sequence statusi: Complete.

C9Z277-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAETTPTPP FRDPQLPVAK RIDDLLQRLT PDERIAFLHQ FAPAVDRLGV
60 70 80 90 100
AAFRTGQEAL HGVAWMGPAT VFPQAVGLGA TWNEELVRRV GEAVSGEVRA
110 120 130 140 150
MRARDDRVGL NVWSPTVNLL RHPLWGRNEE GYSEDPRLTS AIATAYTRGL
160 170 180 190 200
RGDHPTYWRT APVLKHWLAH NNETDRSTTS SSVRPRVLRE YDLRAFRETV
210 220 230 240 250
EAGAVAGVMP AYNLVNGRPN HVSPLLAEQL RTWTDEPLLV CSDAGAPSNL
260 270 280 290 300
VDSEHYFDTH EEATAASLRA GVDSFTDHGT DGSTITGRVR DALTRSLLTM
310 320 330 340 350
DDIDEAVRRQ LSVRFRLGEF DPGSDPYAGV EDFDTPAHRA LAREAAEQAV
360 370 380 390 400
VLLRNEGGLL PLAADTRVAV VGPLADECKL DWYSGTLLHR STPLEGLYDR
410 420 430 440 450
FGAERVTFAE GVDRVRLRAH STGAFVSVPE APEAADEVRG AQGALDPALL
460 470 480 490 500
AGRTDLSPLT TDPDGSELAL VDWGEGVLTL RAPDGRYLSV ADDGFLRASA
510 520 530 540 550
DQPGGWFVQE TFRLEPCAPH GTGHLLKHLG TGRYVTVGTD GVKVADGDPE
560 570 580 590 600
TFDVVVTEHG EAAVARAAAE ADVVLVVAGN DPHINGRETE DRTTLALPAH
610 620 630 640 650
QERLLRAART ANPNTALVLV SAYPYAVDVT GLPAVLWTAH GGQAAGTALA
660 670 680 690 700
RVVAGDVSPA GRLPQTWYAS DADLPGLLDY DVIGSRQTYL YFEGTPLFPF
710 720 730 740 750
GHGLSYAEFA YGNLTARVGD ADLTVSFTVT NTGAVTADEV AQLYVRAEDP
760 770 780 790 800
SVPRPRRELA GHRRVTLAPG ASTELTFRLP LSVLEFWDVT HGAWHREPGA
810 820 830 840 850
YELLAGASSE DIRLRTTVTV DGEPLAPRPV LARGLDAADY DEQRDTEIVD
860 870 880 890 900
RTRVSGDAVT PAGDRPGELL YRACDFGAGV TEVTVEVAGA GSVELALADG
910 920 930 940 950
PAPVTLTLDR PTAGPYAYTT LRAAVSAAGT RDVRLVLRGP LRLAHVGFSG
Length:950
Mass (Da):102,083
Last modified:November 24, 2009 - v1
Checksum:iAA436F2B3D4766AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG69669.1.
RefSeqiWP_013000357.1. NC_013929.1.
YP_003488228.1. NC_013929.1.

Genome annotation databases

EnsemblBacteriaiCBG69669; CBG69669; SCAB_25641.
KEGGiscb:SCAB_25641.
PATRICi35320800. VBIStrSca144334_2509.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG69669.1.
RefSeqiWP_013000357.1. NC_013929.1.
YP_003488228.1. NC_013929.1.

3D structure databases

ProteinModelPortaliC9Z277.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBG69669; CBG69669; SCAB_25641.
KEGGiscb:SCAB_25641.
PATRICi35320800. VBIStrSca144334_2509.

Phylogenomic databases

HOGENOMiHOG000031216.
KOiK05349.
OMAiIKGKRTY.

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-2456-MONOMER.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.20.20.300. 1 hit.
3.40.50.1700. 2 hits.
InterProiIPR008999. Actin_cross-linking.
IPR005084. CMB_fam6.
IPR026891. Fn3-like.
IPR008979. Galactose-bd-like.
IPR026892. Glyco_hydro_3.
IPR002772. Glyco_hydro_3_C.
IPR001764. Glyco_hydro_3_N.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR30620. PTHR30620. 1 hit.
PfamiPF03422. CBM_6. 1 hit.
PF14310. Fn3-like. 1 hit.
PF00933. Glyco_hydro_3. 1 hit.
PF01915. Glyco_hydro_3_C. 1 hit.
[Graphical view]
PRINTSiPR00133. GLHYDRLASE3.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF50405. SSF50405. 1 hit.
SSF51445. SSF51445. 1 hit.
SSF52279. SSF52279. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions."
    Bignell D.R., Seipke R.F., Huguet-Tapia J.C., Chambers A.H., Parry R.J., Loria R.
    Mol. Plant Microbe Interact. 23:161-175(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 87.22Imported.

Entry informationi

Entry nameiC9Z277_STRSW
AccessioniPrimary (citable) accession number: C9Z277
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 27, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.