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C9Z234 (C9Z234_STRSW) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative dihydrodipicolinate synthase 1 EMBL CBG69626.1
Gene names
Name:dapA1 EMBL CBG69626.1
Ordered Locus Names:SCAB_25191
OrganismStreptomyces scabies (strain 87.22) (Streptomyces scabiei) [Complete proteome] [HAMAP]
Taxonomic identifier680198 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptomycineae › Streptomycetaceae › Streptomyces

Protein attributes

Sequence length299 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-aspartate 4-semialdehyde + pyruvate = dihydrodipicolinate + 2 H2O. SAAS SAAS005263

Pathway

Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4. SAAS SAAS005263

Subcellular location

Cytoplasm By similarity SAAS SAAS005263.

Ontologies

Keywords
   Biological processAmino-acid biosynthesis
Diaminopimelate biosynthesis SAAS SAAS005263
Lysine biosynthesis SAAS SAAS005263
   Cellular componentCytoplasm SAAS SAAS005263
   LigandSchiff base SAAS SAAS005263
   Molecular functionLyase SAAS SAAS005263
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processdiaminopimelate biosynthetic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functiondihydrodipicolinate synthase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C9Z234 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: EF882403E47655E3

FASTA29931,371
        10         20         30         40         50         60 
MAPTSTPQTP FGRVLTAMVT PFTADGALDL DGAQRLATHL VDAGNDGLVI NGTTGESPTT 

        70         80         90        100        110        120 
GDAEKSDLVR AVLEAVGDRA HVIAGVGTND TRHSMELARA AEKTGAHGLL VVTPYYNKPP 

       130        140        150        160        170        180 
QEGLYRHFKA IADTSALPVM LYDIPGRSGV PIDTETIVRL AEHPRIVANK DAKGDLGRAS 

       190        200        210        220        230        240 
WAIARSGLAW YSGDDMLNLP LLSVGAVGFV SVVGHVVTPE LRALVDAYVS GDVQKATEIH 

       250        260        270        280        290 
QKLLPVFTGM FRTQGVMTTK AALALQGLPA GPLRAPMVEL SPEETAQLKL DLGAGGVQL

« Hide

References

[1]"Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions."
Bignell D.R., Seipke R.F., Huguet-Tapia J.C., Chambers A.H., Parry R.J., Loria R.
Mol. Plant Microbe Interact. 23:161-175(2010) [PubMed: 20064060] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 87.22 EMBL CBG69626.1.
[2]Bentley S.D.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 87.22 EMBL CBG69626.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FN554889 Genomic DNA. Translation: CBG69626.1.
RefSeqYP_003488185.1. NC_013929.1.

3D structure databases

ProteinModelPortalC9Z234.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8839515.
GenomeReviewsGene locus SCAB_25191 in contig FN554889_GR.
KEGGscb:SCAB_25191.
PATRIC35320710. VBIStrSca144334_2464.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMACEMEDSN.

Family and domain databases

InterProIPR013785. Aldolase_TIM.
IPR002220. Dihydrodipicolinate_synth-like.
IPR020625. Dihydrodipicolinate_synth_AS.
IPR020624. Dihydrodipicolinate_synth_CS.
IPR005263. Dihydrodipicolinate_synth_DapA.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01714.
PANTHERPTHR12128. DHDPS. 1 hit.
PfamPF00701. DHDPS. 1 hit.
[Graphical view]
PIRSFPIRSF001365. DHDPS. 1 hit.
PRINTSPR00146. DHPICSNTHASE.
TIGRFAMsTIGR00674. DapA. 1 hit.
PROSITEPS00665. DHDPS_1. 1 hit.
PS00666. DHDPS_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC9Z234_STRSW
AccessionPrimary (citable) accession number: C9Z234
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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