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Protein

Glutamate decarboxylase

Gene

SCAB_39881

Organism
Streptomyces scabies (strain 87.22) (Streptomyces scabiei)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-3870-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Ordered Locus Names:SCAB_39881Imported
OrganismiStreptomyces scabies (strain 87.22) (Streptomyces scabiei)Imported
Taxonomic identifieri680198 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces
ProteomesiUP000001444 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi680198.SCAB_39881.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000070228.
KOiK01580.
OMAiRNADRYP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

C9Z0V4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLHRWDSDD ARDGGNGRKD GHRLAVNPFY GQANPAGGMT EAPPKHRLPD
60 70 80 90 100
APLPPSTAYQ LVHDELMLDG NSRLNLATFV TTWMEPEAGV LMGECRDKNM
110 120 130 140 150
IDKDEYPRTA ELERRCVSML ADLWNAPDPA AAVGCSTTGS SEACMLAGMA
160 170 180 190 200
LKRRWAKRNA DRYPSADARP NLVMGVNVQV CWEKFCNFWE VEARQVPMEG
210 220 230 240 250
DRFHLDPAAA AALCDENTIG VVGVLGSTFD GSYEPIAELC AVLDDLQERT
260 270 280 290 300
GLNVPVHVDG ASGAMVAPFL DEELVWDFRL PRVASINTSG HKYGLVYPGV
310 320 330 340 350
GWALWRSAEE LPEELVFRVN YLGGDMPTFA LNFSRPGAQV VAQYYTFLRL
360 370 380 390 400
GREGFRAVQQ STRDVATLLA QQVGGFGDFR LLTRGDELPV FAFTTNEDVT
410 420 430 440 450
AYDVFDVARR MRERGWLVPA YTFPENREDL SVLRVVCRNG FTSDLAGLFM
460 470
EDLGSLLPEL RRQRGPLTRD AGAATGFHH
Length:479
Mass (Da):53,024
Last modified:November 24, 2009 - v1
Checksum:i1D671A808F21953F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG71067.1.
RefSeqiWP_013001690.1. NC_013929.1.

Genome annotation databases

EnsemblBacteriaiCBG71067; CBG71067; SCAB_39881.
GeneIDi24307487.
KEGGiscb:SCAB_39881.
PATRICi35323628. VBIStrSca144334_3909.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN554889 Genomic DNA. Translation: CBG71067.1.
RefSeqiWP_013001690.1. NC_013929.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi680198.SCAB_39881.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBG71067; CBG71067; SCAB_39881.
GeneIDi24307487.
KEGGiscb:SCAB_39881.
PATRICi35323628. VBIStrSca144334_3909.

Phylogenomic databases

HOGENOMiHOG000070228.
KOiK01580.
OMAiRNADRYP.

Enzyme and pathway databases

BioCyciSSCA680198:GJ76-3870-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions."
    Bignell D.R., Seipke R.F., Huguet-Tapia J.C., Chambers A.H., Parry R.J., Loria R.
    Mol. Plant Microbe Interact. 23:161-175(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 87.22Imported.

Entry informationi

Entry nameiC9Z0V4_STRSW
AccessioniPrimary (citable) accession number: C9Z0V4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: July 22, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.