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C9YJU8 (C9YJU8_PEPDR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:serA EMBL CBE02943.1
Ordered Locus Names:CDR20291_0848 EMBL CBE02943.1
OrganismPeptoclostridium difficile (strain R20291) (Clostridium difficile) [Complete proteome] [HAMAP] EMBL CBE02943.1
Taxonomic identifier645463 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium

Protein attributes

Sequence length313 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Ontologies

Sequences

Sequence LengthMass (Da)Tools
C9YJU8 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: 49503EA420A04067

FASTA31334,666
        10         20         30         40         50         60 
MYNILVTDGI EKEAARKLRE LDFNVIEQFY EKDVLGDKLK DVDVLVVRSA TKVTKDVIDK 

        70         80         90        100        110        120 
ALEGKKLKLI VRGGVGLDNI DVKYAQANGI KVMNTPNASS ISVAELTIGQ LFVLARFINT 

       130        140        150        160        170        180 
ANVTMRDGKW EKKKYKGTEI NGKTLGLIGF GRIAKEVAKR AELLGMNVIY TDIMGEAQGF 

       190        200        210        220        230        240 
NNYKFCDMEE VLENADFLSL HIPFDKNKGA VITEKEINKM KKGAYLINCA RGGLVDEKDL 

       250        260        270        280        290        300 
LKALDEGKLS AAAIDVYEQE PTLNLDLVNH PRVSPTPHIG ASTVEAQERI GDEIVNVIQD 

       310 
FFLDFNNLIG VAL 

« Hide

References

[1]"Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium."
Stabler R.A., He M., Dawson L., Martin M., Valiente E., Corton C., Lawley T.D., Sebaihia M., Quail M.A., Rose G., Gerding D.N., Gibert M., Popoff M.R., Parkhill J., Dougan G., Wren B.W.
Genome Biol. 10:R102.1-R102.15(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: R20291 EMBL CBE02943.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN545816 Genomic DNA. Translation: CBE02943.1.
RefSeqYP_003217349.1. NC_013316.1.

3D structure databases

ProteinModelPortalC9YJU8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING645463.CDR20291_0848.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBE02943; CBE02943; CDR20291_0848.
GeneID8467458.
KEGGcdl:CDR20291_0848.
PATRIC19455510. VBICloDif78408_0910.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0111.
HOGENOMHOG000136700.
KOK00058.
OMAFGRIGYQ.
OrthoDBEOG6VXFC3.

Enzyme and pathway databases

BioCycCDIF645463:GJP4-923-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 2 hits.
InterProIPR006139. D-isomer_2_OHA_DH_cat_dom.
IPR006140. D-isomer_2_OHA_DH_NAD-bd.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamPF00389. 2-Hacid_dh. 1 hit.
PF02826. 2-Hacid_dh_C. 1 hit.
[Graphical view]
PROSITEPS00671. D_2_HYDROXYACID_DH_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC9YJU8_PEPDR
AccessionPrimary (citable) accession number: C9YJU8
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: June 11, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)