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C9XSG9 (C9XSG9_CLODC) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
GntR-family transcriptional regulator EMBL CBA66781.1
Gene names
Ordered Locus Names:CD196_3356
OrganismClostridium difficile (strain CD196) [Complete proteome] [HAMAP]
Taxonomic identifier645462 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Peptostreptococcaceae ›

Protein attributes

Sequence length226 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH gntR-type DNA-binding domain. RuleBase RU000706 SAAS SAAS011711

Sequences

Sequence LengthMass (Da)Tools
C9XSG9 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: F2D7A8C871E267B3

FASTA22626,038
        10         20         30         40         50         60 
MENLTKLNLD NYKPLRDVVF ENLREAILEG KLKPGQRLME VQLAEQLGVS RTPVREAIRK 

        70         80         90        100        110        120 
LELEGLVVML PRKGAYVANM SLKDIMDVLE VRASLEGLAA YLAAERISDE DIKKLKDISE 

       130        140        150        160        170        180 
EFKKSTLESD VDALLKLDVE FHECIFKATN NKKLIQLINS LWEQVYRFRV TYMSAYDTSH 

       190        200        210        220 
NIVEEHKYLL DAIIKGDSEL SKKYATEHIE KAEQFMIDKA MISKDL

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References

[1]"Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium."
Stabler R.A., He M., Dawson L., Martin M., Valiente E., Corton C., Lawley T.D., Sebaihia M., Quail M.A., Rose G., Gerding D.N., Gibert M., Popoff M.R., Parkhill J., Dougan G., Wren B.W.
Genome Biol. 10:R102.1-R102.15(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CD196.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FN538970 Genomic DNA. Translation: CBA66781.1.
RefSeqYP_003216370.1. NC_013315.1.

3D structure databases

ProteinModelPortalC9XSG9.
ModBaseSearch...

Protein-protein interaction databases

STRING645462.CD196_3356.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBA66781; CBA66781; CD196_3356.
GeneID8466678.
KEGGcdc:CD196_3356.
PATRIC19453240. VBICloDif125228_3523.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1802.
HOGENOMHOG000273990.

Enzyme and pathway databases

BioCycCDIF645462:GJED-3453-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR000485. AsnC-type_HTH_dom.
IPR011711. GntR_C.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF07729. FCD. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
PRINTSPR00033. HTHASNC.
PR00035. HTHGNTR.
SMARTSM00895. FCD. 1 hit.
SM00345. HTH_GNTR. 1 hit.
[Graphical view]
PROSITEPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC9XSG9_CLODC
AccessionPrimary (citable) accession number: C9XSG9
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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