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Protein

Superoxide dismutase

Gene

sodA

Organism
Peptoclostridium difficile (strain CD196) (Clostridium difficile)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciCDIF645462:GJED-1639-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodAImported
Ordered Locus Names:CD196_1554Imported
ORF Names:QGC_1497Imported
OrganismiPeptoclostridium difficile (strain CD196) (Clostridium difficile)Imported
Taxonomic identifieri645462 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
ProteomesiUP000002068: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi645462.CD196_1554.

Structurei

3D structure databases

ProteinModelPortaliC9XQ61.
SMRiC9XQ61. Positions 30-228.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013584.
KOiK04564.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9XQ61-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKKKILIPVI MSLFIISQCI TSFAFTPENN KFKVKPLPYA YDALEPYIDK
60 70 80 90 100
ETMKLHHDKH YQAYVDKLNA ALEKYPELYN YSLCELLQNL DSLPKDIATT
110 120 130 140 150
VRNNAGGAYN HKFFFDIMTP EKTIPSESLK EAIDRDFGSF EKFKQEFQKS
160 170 180 190 200
ALDVFGSGWA WLVATKDGKL SIMTTPNQDS PVSKNLTPII GLDVWEHAYY
210 220 230
LKYQNRRNEY IDNWFNVVNW NGALENYKNL KSQD
Length:234
Mass (Da):27,206
Last modified:November 24, 2009 - v1
Checksum:iE26DF02D360B245B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN538970 Genomic DNA. Translation: CBA62973.1.
AVIE01000439 Genomic DNA. Translation: EQF72180.1.
RefSeqiYP_003214581.1. NC_013315.1.

Genome annotation databases

EnsemblBacteriaiCBA62973; CBA62973; CD196_1554.
EQF72180; EQF72180; QGC_1497.
GeneIDi8464358.
KEGGicdc:CD196_1554.
PATRICi19449429. VBICloDif125228_1629.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN538970 Genomic DNA. Translation: CBA62973.1.
AVIE01000439 Genomic DNA. Translation: EQF72180.1.
RefSeqiYP_003214581.1. NC_013315.1.

3D structure databases

ProteinModelPortaliC9XQ61.
SMRiC9XQ61. Positions 30-228.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi645462.CD196_1554.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBA62973; CBA62973; CD196_1554.
EQF72180; EQF72180; QGC_1497.
GeneIDi8464358.
KEGGicdc:CD196_1554.
PATRICi19449429. VBICloDif125228_1629.

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013584.
KOiK04564.
OrthoDBiEOG63NMNT.

Enzyme and pathway databases

BioCyciCDIF645462:GJED-1639-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium."
    Stabler R.A., He M., Dawson L., Martin M., Valiente E., Corton C., Lawley T.D., Sebaihia M., Quail M.A., Rose G., Gerding D.N., Gibert M., Popoff M.R., Parkhill J., Dougan G., Wren B.W.
    Genome Biol. 10:R102.1-R102.15(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CD196Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CD196Imported.

Entry informationi

Entry nameiC9XQ61_PEPDC
AccessioniPrimary (citable) accession number: C9XQ61
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: February 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.