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C9XBM2 (C9XBM2_SALTD) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:STMMW_07661 EMBL CBG23775.1
OrganismSalmonella typhimurium (strain D23580) [Complete proteome] [HAMAP] EMBL CBG23775.1
Taxonomic identifier568708 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella

Protein attributes

Sequence length473 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the DNA photolyase class-1 family. RuleBase RU004182

Ontologies

Sequences

Sequence LengthMass (Da)Tools
C9XBM2 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: C54CBC13BF05D394

FASTA47353,675
        10         20         30         40         50         60 
MPTHLVWFRR DLRLQDNLAL AAACRDASAR VLALYISTPA QWQAHDMAPR QAAFISAQLN 

        70         80         90        100        110        120 
ALQTALAEKG IPLLFHEVAD FNASIETVKN VCRQHDVSHL FYNYQYEFNE RQRDAAVEKT 

       130        140        150        160        170        180 
LPSVICEGFD DSVILAPGAV MTGNHEMYKV FTPFKNAWLK RLKEDIPPCV PAPKIRVSGA 

       190        200        210        220        230        240 
LSTPLTPVSL NYPQQAFDAA LFPVEENAVI AQLRQFCAQG ADEYALRRDF PAVDGTSRLS 

       250        260        270        280        290        300 
ASLATGGLSP RQCLHRLLAE QPQALDGGPG SVWLNELIWR EFYRHLMTWY PALCKHQPFI 

       310        320        330        340        350        360 
RWTKRVAWQE NPHYFQAWQK GETGYPIVDA AMRQLNATGW MHNRLRMITA SFLVKDLLID 

       370        380        390        400        410        420 
WRLGERYFMS QLIDGDLAAN NGGWQWAAST GTDAAPYFRI FNPTTQGERF DRDGEFIRQW 

       430        440        450        460        470 
LPALRDIPGK AIHEPWRWAE KAGVVLDYPR PIVEHKQARI ATLSAYEAAR KGA 

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References

[1]"Epidemic multiple drug resistant Salmonella typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype."
Kingsley R.A., Msefula C.L., Thomson N.R., Kariuki S., Holt K.E., Gordon M.A., Harris D., Clarke L., Whitehead S., Sangal V., Marsh K., Achtman M., Molyneux M.E., Cormican M., Parkhill J., Maclennan C.A., Heyderman R.S., Dougan G.
Genome Res. 19:2279-2287(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: D23580 EMBL CBG23775.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN424405 Genomic DNA. Translation: CBG23775.1.
RefSeqYP_005231826.1. NC_016854.1.

3D structure databases

ProteinModelPortalC9XBM2.
SMRC9XBM2. Positions 3-471.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBG23775; CBG23775; STMMW_07661.
PATRIC36722665. VBISalEnt111430_0782.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000245621.

Enzyme and pathway databases

BioCycSENT568708:GJDP-775-MONOMER.

Family and domain databases

Gene3D3.40.50.620. 1 hit.
InterProIPR002081. Cryptochrome/DNA_photolyase_1.
IPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
PRINTSPR00147. DNAPHOTLYASE.
SUPFAMSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS00691. DNA_PHOTOLYASES_1_2. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC9XBM2_SALTD
AccessionPrimary (citable) accession number: C9XBM2
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: February 19, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)