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C9XBM2

- C9XBM2_SALTD

UniProt

C9XBM2 - C9XBM2_SALTD

Protein
Submitted name:

Deoxyribodipyrimidine photolyase

Gene

STMMW_07661

Organism
Salmonella typhimurium (strain D23580)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 27 (01 Oct 2014)
      Sequence version 1 (24 Nov 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA photolyase activity Source: InterPro

    GO - Biological processi

    1. DNA repair Source: InterPro
    2. protein-chromophore linkage Source: UniProtKB-KW

    Keywords - Molecular functioni

    LyaseImported

    Keywords - Ligandi

    ChromophoreUniRule annotation, FADUniRule annotation, Flavoprotein

    Enzyme and pathway databases

    BioCyciSENT568708:GJDP-775-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Deoxyribodipyrimidine photolyaseImported
    Gene namesi
    Ordered Locus Names:STMMW_07661Imported
    OrganismiSalmonella typhimurium (strain D23580)Imported
    Taxonomic identifieri568708 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
    ProteomesiUP000002622: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliC9XBM2.
    SMRiC9XBM2. Positions 3-471.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the DNA photolyase class-1 family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000245621.

    Family and domain databases

    Gene3Di3.40.50.620. 1 hit.
    InterProiIPR002081. Cryptochrome/DNA_photolyase_1.
    IPR018394. DNA_photolyase_1_CS_C.
    IPR006050. DNA_photolyase_N.
    IPR005101. Photolyase_FAD-bd/Cryptochr_C.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view]
    PfamiPF00875. DNA_photolyase. 1 hit.
    PF03441. FAD_binding_7. 1 hit.
    [Graphical view]
    PRINTSiPR00147. DNAPHOTLYASE.
    SUPFAMiSSF48173. SSF48173. 1 hit.
    SSF52425. SSF52425. 1 hit.
    PROSITEiPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
    PS00691. DNA_PHOTOLYASES_1_2. 1 hit.
    PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C9XBM2-1 [UniParc]FASTAAdd to Basket

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    MPTHLVWFRR DLRLQDNLAL AAACRDASAR VLALYISTPA QWQAHDMAPR    50
    QAAFISAQLN ALQTALAEKG IPLLFHEVAD FNASIETVKN VCRQHDVSHL 100
    FYNYQYEFNE RQRDAAVEKT LPSVICEGFD DSVILAPGAV MTGNHEMYKV 150
    FTPFKNAWLK RLKEDIPPCV PAPKIRVSGA LSTPLTPVSL NYPQQAFDAA 200
    LFPVEENAVI AQLRQFCAQG ADEYALRRDF PAVDGTSRLS ASLATGGLSP 250
    RQCLHRLLAE QPQALDGGPG SVWLNELIWR EFYRHLMTWY PALCKHQPFI 300
    RWTKRVAWQE NPHYFQAWQK GETGYPIVDA AMRQLNATGW MHNRLRMITA 350
    SFLVKDLLID WRLGERYFMS QLIDGDLAAN NGGWQWAAST GTDAAPYFRI 400
    FNPTTQGERF DRDGEFIRQW LPALRDIPGK AIHEPWRWAE KAGVVLDYPR 450
    PIVEHKQARI ATLSAYEAAR KGA 473
    Length:473
    Mass (Da):53,675
    Last modified:November 24, 2009 - v1
    Checksum:iC54CBC13BF05D394
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN424405 Genomic DNA. Translation: CBG23775.1.
    RefSeqiYP_005231826.1. NC_016854.1.

    Genome annotation databases

    EnsemblBacteriaiCBG23775; CBG23775; STMMW_07661.
    PATRICi36722665. VBISalEnt111430_0782.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN424405 Genomic DNA. Translation: CBG23775.1 .
    RefSeqi YP_005231826.1. NC_016854.1.

    3D structure databases

    ProteinModelPortali C9XBM2.
    SMRi C9XBM2. Positions 3-471.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBG23775 ; CBG23775 ; STMMW_07661 .
    PATRICi 36722665. VBISalEnt111430_0782.

    Phylogenomic databases

    HOGENOMi HOG000245621.

    Enzyme and pathway databases

    BioCyci SENT568708:GJDP-775-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.620. 1 hit.
    InterProi IPR002081. Cryptochrome/DNA_photolyase_1.
    IPR018394. DNA_photolyase_1_CS_C.
    IPR006050. DNA_photolyase_N.
    IPR005101. Photolyase_FAD-bd/Cryptochr_C.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view ]
    Pfami PF00875. DNA_photolyase. 1 hit.
    PF03441. FAD_binding_7. 1 hit.
    [Graphical view ]
    PRINTSi PR00147. DNAPHOTLYASE.
    SUPFAMi SSF48173. SSF48173. 1 hit.
    SSF52425. SSF52425. 1 hit.
    PROSITEi PS00394. DNA_PHOTOLYASES_1_1. 1 hit.
    PS00691. DNA_PHOTOLYASES_1_2. 1 hit.
    PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Epidemic multiple drug resistant Salmonella typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype."
      Kingsley R.A., Msefula C.L., Thomson N.R., Kariuki S., Holt K.E., Gordon M.A., Harris D., Clarke L., Whitehead S., Sangal V., Marsh K., Achtman M., Molyneux M.E., Cormican M., Parkhill J., Maclennan C.A., Heyderman R.S., Dougan G.
      Genome Res. 19:2279-2287(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: D23580Imported.

    Entry informationi

    Entry nameiC9XBM2_SALTD
    AccessioniPrimary (citable) accession number: C9XBM2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 24, 2009
    Last sequence update: November 24, 2009
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3