C9XBM2 (C9XBM2_SALTD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Deoxyribodipyrimidine photolyase EMBL CBG23775.1

Gene names

Ordered Locus Names:

STMMW_07661 EMBL CBG23775.1

Organism

Salmonella typhimurium (strain D23580) [Complete proteome] [HAMAP] EMBL CBG23775.1

Taxonomic identifier

568708 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Salmonella › Salmonella choleraesuis › Salmonella enterica I › Salmonella typhimurium

Protein attributes

Sequence length	473 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the DNA photolyase class-1 family. RuleBase RU004182

Ontologies

Keywords
Ligand	Chromophore RuleBase RU004291 FAD RuleBase RU004291 Flavoprotein RuleBase RU004291
Molecular function	Lyase EMBL CBG23775.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro protein-chromophore linkage Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	DNA photolyase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C9XBM2 [UniParc]. Last modified November 24, 2009. Version 1. Checksum: C54CBC13BF05D394	FASTA	473	53,675
	10 20 30 40 50 60 MPTHLVWFRR DLRLQDNLAL AAACRDASAR VLALYISTPA QWQAHDMAPR QAAFISAQLN 70 80 90 100 110 120 ALQTALAEKG IPLLFHEVAD FNASIETVKN VCRQHDVSHL FYNYQYEFNE RQRDAAVEKT 130 140 150 160 170 180 LPSVICEGFD DSVILAPGAV MTGNHEMYKV FTPFKNAWLK RLKEDIPPCV PAPKIRVSGA 190 200 210 220 230 240 LSTPLTPVSL NYPQQAFDAA LFPVEENAVI AQLRQFCAQG ADEYALRRDF PAVDGTSRLS 250 260 270 280 290 300 ASLATGGLSP RQCLHRLLAE QPQALDGGPG SVWLNELIWR EFYRHLMTWY PALCKHQPFI 310 320 330 340 350 360 RWTKRVAWQE NPHYFQAWQK GETGYPIVDA AMRQLNATGW MHNRLRMITA SFLVKDLLID 370 380 390 400 410 420 WRLGERYFMS QLIDGDLAAN NGGWQWAAST GTDAAPYFRI FNPTTQGERF DRDGEFIRQW 430 440 450 460 470 LPALRDIPGK AIHEPWRWAE KAGVVLDYPR PIVEHKQARI ATLSAYEAAR KGA

References

[1]

"Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype." Kingsley R.A., Msefula C.L., Thomson N.R., Kariuki S., Holt K.E., Gordon M.A., Harris D., Clarke L., Whitehead S., Sangal V., Marsh K., Achtman M., Molyneux M.E., Cormican M., Parkhill J., Maclennan C.A., Heyderman R.S., Dougan G. Genome Res. 19:2279-2287(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: D23580 EMBL CBG23775.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FN424405 Genomic DNA. Translation: CBG23775.1.
RefSeq	YP_005231826.1. NC_016854.1.
3D structure databases
ProteinModelPortal	C9XBM2.
SMR	C9XBM2. Positions 3-471.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBG23775; CBG23775; STMMW_07661.
GeneID	11760432.
KEGG	sev:STMMW_07661.
PATRIC	36722665. VBISalEnt111430_0782.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000245621.
KO	K01669.
Family and domain databases
Gene3D	3.40.50.620. 1 hit.
InterPro	IPR002081. Cryptochrome/DNA_photolyase_1. IPR018394. DNA_photolyase_1_CS_C. IPR006050. DNA_photolyase_N. IPR005101. Photolyase_FAD-bd/Cryptochr_C. IPR014729. Rossmann-like_a/b/a_fold. [Graphical view]
Pfam	PF00875. DNA_photolyase. 1 hit. PF03441. FAD_binding_7. 1 hit. [Graphical view]
PRINTS	PR00147. DNAPHOTLYASE.
SUPFAM	SSF52425. DNA_photolyase_N. 1 hit. SSF48173. Photolyase_FAD-bd/Cryptochr_C. 1 hit.
PROSITE	PS00394. DNA_PHOTOLYASES_1_1. 1 hit. PS00691. DNA_PHOTOLYASES_1_2. 1 hit. PS51645. PHR_CRY_ALPHA_BETA. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C9XBM2_SALTD

Accession

Primary (citable) accession number: C9XBM2

Entry history

Integrated into UniProtKB/TrEMBL:	November 24, 2009
Last sequence update:	November 24, 2009
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)