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Protein
Submitted name:

Deoxyribodipyrimidine photolyase

Gene

STMMW_07661

Organism
Salmonella typhimurium (strain D23580)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. DNA photolyase activity Source: InterPro

GO - Biological processi

  1. DNA repair Source: InterPro
  2. protein-chromophore linkage Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Keywords - Ligandi

ChromophoreUniRule annotation, FADUniRule annotation, Flavoprotein

Enzyme and pathway databases

BioCyciSENT568708:GJDP-775-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Deoxyribodipyrimidine photolyaseImported
Gene namesi
Ordered Locus Names:STMMW_07661Imported
OrganismiSalmonella typhimurium (strain D23580)Imported
Taxonomic identifieri568708 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
ProteomesiUP000002622 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliC9XBM2.
SMRiC9XBM2. Positions 3-471.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DNA photolyase class-1 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000245621.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR002081. Cryptochrome/DNA_photolyase_1.
IPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
PRINTSiPR00147. DNAPHOTLYASE.
SUPFAMiSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEiPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS00691. DNA_PHOTOLYASES_1_2. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9XBM2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTHLVWFRR DLRLQDNLAL AAACRDASAR VLALYISTPA QWQAHDMAPR
60 70 80 90 100
QAAFISAQLN ALQTALAEKG IPLLFHEVAD FNASIETVKN VCRQHDVSHL
110 120 130 140 150
FYNYQYEFNE RQRDAAVEKT LPSVICEGFD DSVILAPGAV MTGNHEMYKV
160 170 180 190 200
FTPFKNAWLK RLKEDIPPCV PAPKIRVSGA LSTPLTPVSL NYPQQAFDAA
210 220 230 240 250
LFPVEENAVI AQLRQFCAQG ADEYALRRDF PAVDGTSRLS ASLATGGLSP
260 270 280 290 300
RQCLHRLLAE QPQALDGGPG SVWLNELIWR EFYRHLMTWY PALCKHQPFI
310 320 330 340 350
RWTKRVAWQE NPHYFQAWQK GETGYPIVDA AMRQLNATGW MHNRLRMITA
360 370 380 390 400
SFLVKDLLID WRLGERYFMS QLIDGDLAAN NGGWQWAAST GTDAAPYFRI
410 420 430 440 450
FNPTTQGERF DRDGEFIRQW LPALRDIPGK AIHEPWRWAE KAGVVLDYPR
460 470
PIVEHKQARI ATLSAYEAAR KGA
Length:473
Mass (Da):53,675
Last modified:November 23, 2009 - v1
Checksum:iC54CBC13BF05D394
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN424405 Genomic DNA. Translation: CBG23775.1.
RefSeqiYP_005231826.1. NC_016854.1.

Genome annotation databases

EnsemblBacteriaiCBG23775; CBG23775; STMMW_07661.
PATRICi36722665. VBISalEnt111430_0782.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN424405 Genomic DNA. Translation: CBG23775.1.
RefSeqiYP_005231826.1. NC_016854.1.

3D structure databases

ProteinModelPortaliC9XBM2.
SMRiC9XBM2. Positions 3-471.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCBG23775; CBG23775; STMMW_07661.
PATRICi36722665. VBISalEnt111430_0782.

Phylogenomic databases

HOGENOMiHOG000245621.

Enzyme and pathway databases

BioCyciSENT568708:GJDP-775-MONOMER.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR002081. Cryptochrome/DNA_photolyase_1.
IPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
PRINTSiPR00147. DNAPHOTLYASE.
SUPFAMiSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEiPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS00691. DNA_PHOTOLYASES_1_2. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Epidemic multiple drug resistant Salmonella typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype."
    Kingsley R.A., Msefula C.L., Thomson N.R., Kariuki S., Holt K.E., Gordon M.A., Harris D., Clarke L., Whitehead S., Sangal V., Marsh K., Achtman M., Molyneux M.E., Cormican M., Parkhill J., Maclennan C.A., Heyderman R.S., Dougan G.
    Genome Res. 19:2279-2287(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: D23580Imported.

Entry informationi

Entry nameiC9XBM2_SALTD
AccessioniPrimary (citable) accession number: C9XBM2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 23, 2009
Last sequence update: November 23, 2009
Last modified: January 6, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.