C9TWF0 (C9TWF0_BRUPB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23 HAMAP-Rule MF_01369

Gene names

Name:	rplW HAMAP-Rule MF_01369 EMBL AEK54546.1
ORF Names:	BAHG_01514 EMBL EEY00585.1, BPI_I1279 EMBL AEK54546.1

Organism

Brucella pinnipedialis (strain NCTC 12890 / BCCN 94-73 / B2/94) [Complete proteome] [HAMAP] EMBL EEY00585.1

Taxonomic identifier

520461 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Brucellaceae › Brucella › Brucella pinnipedialis

Protein attributes

Sequence length	97 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP-Rule MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. HAMAP-Rule MF_01369

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01369
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01369 EMBL EEY00585.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C9TWF0 [UniParc]. Last modified November 24, 2009. Version 1. Checksum: A485EE3886022FA3	FASTA	97	10,535
	10 20 30 40 50 60 MTDLRHYDVI VSPVITEKST MVSEHNQVVF NVARKATKPE IKAAVEALFG VKVTAVNTAV 70 80 90 RKGKVKRFRG LVGRQSDVKK AIVTLAEGQS IDVSTGL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The Genome Sequence of Brucella pinnipedialis B2/94." The Broad Institute Genome Sequencing Platform Ward D., Young S.K., Kodira C.D., Zeng Q., Koehrsen M., Alvarado L., Berlin A., Borenstein D., Chen Z., Engels R., Freedman E., Gellesch M., Goldberg J., Griggs A., Gujja S., Heiman D., Hepburn T., Howarth C. , Jen D., Larson L., Lewis B., Mehta T., Park D., Pearson M., Roberts A., Saif S., Shea T., Shenoy N., Sisk P., Stolte C., Sykes S., Walk T., White J., Yandava C., Whatmore A.M., Perrett L.L., O'Callaghan D., Nusbaum C., Galagan J., Birren B. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: B2/94 EMBL EEY00585.1.
[2]	Zygmunt M., Clockaert A. Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: B2/94 EMBL AEK54546.1.
[3]	"The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella." Audic S., Lescot M., Claverie J.M., Cloeckaert A., Zygmunt M.S. BMC Evol. Biol. 11:200-200(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B2/94 EMBL AEK54546.1 and NCTC 12890 / BCCN 94-73 / B2/94.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002078 Genomic DNA. Translation: AEK54546.1. DS999848 Genomic DNA. Translation: EEY00585.1.
RefSeq	YP_004756314.1. NC_015857.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEK54546; AEK54546; BPI_I1279. EEY00585; EEY00585; BAHG_01514.
GeneID	10997756.
KEGG	bpp:BPI_I1279.
PATRIC	24252378. VBIBruPin17457_1314.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K02892.
Enzyme and pathway databases
BioCyc	BPIN520461:GJF0-1277-MONOMER.
Family and domain databases
Gene3D	3.30.70.330. 1 hit.
HAMAP	MF_01369_B. Ribosomal_L23_B.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR013025. Ribosomal_L25/23. [Graphical view]
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C9TWF0_BRUPB

Accession

Primary (citable) accession number: C9TWF0

Entry history

Integrated into UniProtKB/TrEMBL:	November 24, 2009
Last sequence update:	November 24, 2009
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)