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C9SP42

- C9SP42_VERA1

UniProt

C9SP42 - C9SP42_VERA1

Protein
Submitted name:

DNA ligase

Gene

VDBG_06667

Organism
Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (24 Nov 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    ORF Names:VDBG_06667Imported
    OrganismiVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)Imported
    Taxonomic identifieri526221 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesHypocreomycetidaeGlomerellalesPlectosphaerellaceaemitosporic PlectosphaerellaceaeVerticillium
    ProteomesiUP000008698: Unassembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliC9SP42.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK10777.
    OrthoDBiEOG7QC84G.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProiIPR001357. BRCT_dom.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 2 hits.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    PROSITEiPS50172. BRCT. 2 hits.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C9SP42-1 [UniParc]FASTAAdd to Basket

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    MSHREGQPSP SAAAIGEDER QYAVGGMTSQ EVNENYPGRP RNHSETFLFS    50
    ELFKSLFNPL MENKKQPPGS GPPRAKLGPH GPSKPSPSEQ RRHIIDRFIS 100
    RWRKNVGHDF YPAMRLILPD KDRDRGVYGL KENAIGKLLV KLMKIDKNSE 150
    DGYNLLHWKL PGQTTASRMA GDFAGRAFEV LSKRPMRIEV GDMTIADVNE 200
    LLDKLAGSSG ELENLEVFET FYERMNAEEL MWLIRIILKQ MKVGATEKTL 250
    LHLWHPDAET LFNVSSSLRR VCWELFDPQV RLEQENTGVT LMQCFQPQLA 300
    QFQMPASFQK MVDYLRPPRG SRGLKDDRGA WTRHLGKAFA AGVRNIILDG 350
    EMITWDPDTD KIMQFGTLKT AALAEQKNPY NNTGPRPLFR VFDILYLNDQ 400
    PLTRYTLRDR YNALRKAVIG VHRRIEVHEH EAATSADAIE PLLRKVVAEA 450
    SEGLVLKNPR SMYRLNSRND DWLKVKPEYM TEFGESLDCV VIGGYYGSGK 500
    RGGILSTYLC GLRVSENHIK AGANPEKCFS LFKVGGGFSV EDYAEIRHHT 550
    DGKWKDWDPK KPPNEYIELA HGFAEKPDVW IRPKDSFVLE AKASSVGPSD 600
    QFALGFTLRF PRFRKLRKDK SWDQGLSVQE FQDLRRRVEE EAQEKTMSVE 650
    NTKRRAVKRV KKELVIAGTD STPVQFEGEK SKVFEGLEFC VLSESLKPFK 700
    KTKTQLETTI KANGGRITQR HAARSDLILI ADKRVVSVAS LIKKGDVDII 750
    RPNWVQDCLA QETDDGLLPY EERHLFHATE GLREIARQNT DEFGDSYFRI 800
    VDVEELRQIL VDMSPHEKSE ERDEDAAEFA RQLKERGNDL GERDSAVFGR 850
    CVVHLHVLPG GELDAFRLRN YIAFGGGEVT DGLPVDSSTH IMLVGGRDAE 900
    KQDAAVSVRK DIGNRQKIPR VVASQWVEDS WKERTMLDEE RYRV 944
    Length:944
    Mass (Da):107,488
    Last modified:November 24, 2009 - v1
    Checksum:i448065C4B55155B6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS985221 Genomic DNA. Translation: EEY20557.1.
    RefSeqiXP_003003105.1. XM_003003059.1.

    Genome annotation databases

    GeneIDi9537149.
    KEGGival:VDBG_06667.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS985221 Genomic DNA. Translation: EEY20557.1 .
    RefSeqi XP_003003105.1. XM_003003059.1.

    3D structure databases

    ProteinModelPortali C9SP42.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 9537149.
    KEGGi val:VDBG_06667.

    Phylogenomic databases

    KOi K10777.
    OrthoDBi EOG7QC84G.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProi IPR001357. BRCT_dom.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 2 hits.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    PROSITEi PS50172. BRCT. 2 hits.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: VaMs.102 / ATCC MYA-4576 / FGSC 10136Imported.

    Entry informationi

    Entry nameiC9SP42_VERA1
    AccessioniPrimary (citable) accession number: C9SP42
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 24, 2009
    Last sequence update: November 24, 2009
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3