Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C9SP42

- C9SP42_VERA1

UniProt

C9SP42 - C9SP42_VERA1

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

DNA ligase

Gene

VDBG_06667

Organism
Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
ORF Names:VDBG_06667Imported
OrganismiVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)Imported
Taxonomic identifieri526221 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesHypocreomycetidaeGlomerellalesPlectosphaerellaceaemitosporic PlectosphaerellaceaeVerticillium
ProteomesiUP000008698: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliC9SP42.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10777.
OrthoDBiEOG7QC84G.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 2 hits.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9SP42-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSHREGQPSP SAAAIGEDER QYAVGGMTSQ EVNENYPGRP RNHSETFLFS
60 70 80 90 100
ELFKSLFNPL MENKKQPPGS GPPRAKLGPH GPSKPSPSEQ RRHIIDRFIS
110 120 130 140 150
RWRKNVGHDF YPAMRLILPD KDRDRGVYGL KENAIGKLLV KLMKIDKNSE
160 170 180 190 200
DGYNLLHWKL PGQTTASRMA GDFAGRAFEV LSKRPMRIEV GDMTIADVNE
210 220 230 240 250
LLDKLAGSSG ELENLEVFET FYERMNAEEL MWLIRIILKQ MKVGATEKTL
260 270 280 290 300
LHLWHPDAET LFNVSSSLRR VCWELFDPQV RLEQENTGVT LMQCFQPQLA
310 320 330 340 350
QFQMPASFQK MVDYLRPPRG SRGLKDDRGA WTRHLGKAFA AGVRNIILDG
360 370 380 390 400
EMITWDPDTD KIMQFGTLKT AALAEQKNPY NNTGPRPLFR VFDILYLNDQ
410 420 430 440 450
PLTRYTLRDR YNALRKAVIG VHRRIEVHEH EAATSADAIE PLLRKVVAEA
460 470 480 490 500
SEGLVLKNPR SMYRLNSRND DWLKVKPEYM TEFGESLDCV VIGGYYGSGK
510 520 530 540 550
RGGILSTYLC GLRVSENHIK AGANPEKCFS LFKVGGGFSV EDYAEIRHHT
560 570 580 590 600
DGKWKDWDPK KPPNEYIELA HGFAEKPDVW IRPKDSFVLE AKASSVGPSD
610 620 630 640 650
QFALGFTLRF PRFRKLRKDK SWDQGLSVQE FQDLRRRVEE EAQEKTMSVE
660 670 680 690 700
NTKRRAVKRV KKELVIAGTD STPVQFEGEK SKVFEGLEFC VLSESLKPFK
710 720 730 740 750
KTKTQLETTI KANGGRITQR HAARSDLILI ADKRVVSVAS LIKKGDVDII
760 770 780 790 800
RPNWVQDCLA QETDDGLLPY EERHLFHATE GLREIARQNT DEFGDSYFRI
810 820 830 840 850
VDVEELRQIL VDMSPHEKSE ERDEDAAEFA RQLKERGNDL GERDSAVFGR
860 870 880 890 900
CVVHLHVLPG GELDAFRLRN YIAFGGGEVT DGLPVDSSTH IMLVGGRDAE
910 920 930 940
KQDAAVSVRK DIGNRQKIPR VVASQWVEDS WKERTMLDEE RYRV
Length:944
Mass (Da):107,488
Last modified:November 24, 2009 - v1
Checksum:i448065C4B55155B6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS985221 Genomic DNA. Translation: EEY20557.1.
RefSeqiXP_003003105.1. XM_003003059.1.

Genome annotation databases

GeneIDi9537149.
KEGGival:VDBG_06667.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS985221 Genomic DNA. Translation: EEY20557.1 .
RefSeqi XP_003003105.1. XM_003003059.1.

3D structure databases

ProteinModelPortali C9SP42.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9537149.
KEGGi val:VDBG_06667.

Phylogenomic databases

KOi K10777.
OrthoDBi EOG7QC84G.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
PANTHERi PTHR10459:SF7. PTHR10459:SF7. 1 hit.
Pfami PF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEi PS50172. BRCT. 2 hits.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: VaMs.102 / ATCC MYA-4576 / FGSC 10136Imported.

Entry informationi

Entry nameiC9SP42_VERA1
AccessioniPrimary (citable) accession number: C9SP42
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: October 29, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3