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Protein
Submitted name:

DNA ligase

Gene

VDBG_06667

Organism
Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
ORF Names:VDBG_06667Imported
OrganismiVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)Imported
Taxonomic identifieri526221 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesHypocreomycetidaeGlomerellalesPlectosphaerellaceaeVerticillium
Proteomesi
  • UP000008698 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi526221.XP_003003105.1

Structurei

3D structure databases

ProteinModelPortaliC9SP42
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini389 – 514DNA_LIGASE_A3InterPro annotationAdd BLAST126
Domaini679 – 759BRCTInterPro annotationAdd BLAST81
Domaini843 – 944BRCTInterPro annotationAdd BLAST102

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili635 – 655Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0966 Eukaryota
COG1793 LUCA
KOiK10777
OrthoDBiEOG092C18KW

Family and domain databases

CDDicd00027 BRCT, 1 hit
Gene3Di1.10.3260.10, 1 hit
3.40.50.10190, 2 hits
InterProiView protein in InterPro
IPR001357 BRCT_dom
IPR036420 BRCT_dom_sf
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR029710 LIG4
IPR012340 NA-bd_OB-fold
PANTHERiPTHR10459:SF7 PTHR10459:SF7, 1 hit
PfamiView protein in Pfam
PF16589 BRCT_2, 1 hit
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SMARTiView protein in SMART
SM00292 BRCT, 2 hits
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
SSF52113 SSF52113, 2 hits
PROSITEiView protein in PROSITE
PS50172 BRCT, 2 hits
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

C9SP42-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHREGQPSP SAAAIGEDER QYAVGGMTSQ EVNENYPGRP RNHSETFLFS
60 70 80 90 100
ELFKSLFNPL MENKKQPPGS GPPRAKLGPH GPSKPSPSEQ RRHIIDRFIS
110 120 130 140 150
RWRKNVGHDF YPAMRLILPD KDRDRGVYGL KENAIGKLLV KLMKIDKNSE
160 170 180 190 200
DGYNLLHWKL PGQTTASRMA GDFAGRAFEV LSKRPMRIEV GDMTIADVNE
210 220 230 240 250
LLDKLAGSSG ELENLEVFET FYERMNAEEL MWLIRIILKQ MKVGATEKTL
260 270 280 290 300
LHLWHPDAET LFNVSSSLRR VCWELFDPQV RLEQENTGVT LMQCFQPQLA
310 320 330 340 350
QFQMPASFQK MVDYLRPPRG SRGLKDDRGA WTRHLGKAFA AGVRNIILDG
360 370 380 390 400
EMITWDPDTD KIMQFGTLKT AALAEQKNPY NNTGPRPLFR VFDILYLNDQ
410 420 430 440 450
PLTRYTLRDR YNALRKAVIG VHRRIEVHEH EAATSADAIE PLLRKVVAEA
460 470 480 490 500
SEGLVLKNPR SMYRLNSRND DWLKVKPEYM TEFGESLDCV VIGGYYGSGK
510 520 530 540 550
RGGILSTYLC GLRVSENHIK AGANPEKCFS LFKVGGGFSV EDYAEIRHHT
560 570 580 590 600
DGKWKDWDPK KPPNEYIELA HGFAEKPDVW IRPKDSFVLE AKASSVGPSD
610 620 630 640 650
QFALGFTLRF PRFRKLRKDK SWDQGLSVQE FQDLRRRVEE EAQEKTMSVE
660 670 680 690 700
NTKRRAVKRV KKELVIAGTD STPVQFEGEK SKVFEGLEFC VLSESLKPFK
710 720 730 740 750
KTKTQLETTI KANGGRITQR HAARSDLILI ADKRVVSVAS LIKKGDVDII
760 770 780 790 800
RPNWVQDCLA QETDDGLLPY EERHLFHATE GLREIARQNT DEFGDSYFRI
810 820 830 840 850
VDVEELRQIL VDMSPHEKSE ERDEDAAEFA RQLKERGNDL GERDSAVFGR
860 870 880 890 900
CVVHLHVLPG GELDAFRLRN YIAFGGGEVT DGLPVDSSTH IMLVGGRDAE
910 920 930 940
KQDAAVSVRK DIGNRQKIPR VVASQWVEDS WKERTMLDEE RYRV
Length:944
Mass (Da):107,488
Last modified:November 24, 2009 - v1
Checksum:i448065C4B55155B6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS985221 Genomic DNA Translation: EEY20557.1
RefSeqiXP_003003105.1, XM_003003059.1

Genome annotation databases

EnsemblFungiiEEY20557; EEY20557; VDBG_06667
GeneIDi9537149
KEGGival:VDBG_06667

Similar proteinsi

Entry informationi

Entry nameiC9SP42_VERA1
AccessioniPrimary (citable) accession number: C9SP42
Entry historyiIntegrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 23, 2018
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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