C9SP42 (C9SP42_VERA1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL EEY20557.1

Gene names

ORF Names:

VDBG_06667 EMBL EEY20557.1

Organism

Verticillium albo-atrum (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt) [Complete proteome]

Taxonomic identifier

526221 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › saccharomyceta › Pezizomycotina › leotiomyceta › sordariomyceta › Sordariomycetes › Hypocreomycetidae › Glomerellales › Plectosphaerellaceae › mitosporic Plectosphaerellaceae › Verticillium › Verticillium albo-atrum

Protein attributes

Sequence length	944 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL EEY20557.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C9SP42 [UniParc]. Last modified November 24, 2009. Version 1. Checksum: 448065C4B55155B6	FASTA	944	107,488
	10 20 30 40 50 60 MSHREGQPSP SAAAIGEDER QYAVGGMTSQ EVNENYPGRP RNHSETFLFS ELFKSLFNPL 70 80 90 100 110 120 MENKKQPPGS GPPRAKLGPH GPSKPSPSEQ RRHIIDRFIS RWRKNVGHDF YPAMRLILPD 130 140 150 160 170 180 KDRDRGVYGL KENAIGKLLV KLMKIDKNSE DGYNLLHWKL PGQTTASRMA GDFAGRAFEV 190 200 210 220 230 240 LSKRPMRIEV GDMTIADVNE LLDKLAGSSG ELENLEVFET FYERMNAEEL MWLIRIILKQ 250 260 270 280 290 300 MKVGATEKTL LHLWHPDAET LFNVSSSLRR VCWELFDPQV RLEQENTGVT LMQCFQPQLA 310 320 330 340 350 360 QFQMPASFQK MVDYLRPPRG SRGLKDDRGA WTRHLGKAFA AGVRNIILDG EMITWDPDTD 370 380 390 400 410 420 KIMQFGTLKT AALAEQKNPY NNTGPRPLFR VFDILYLNDQ PLTRYTLRDR YNALRKAVIG 430 440 450 460 470 480 VHRRIEVHEH EAATSADAIE PLLRKVVAEA SEGLVLKNPR SMYRLNSRND DWLKVKPEYM 490 500 510 520 530 540 TEFGESLDCV VIGGYYGSGK RGGILSTYLC GLRVSENHIK AGANPEKCFS LFKVGGGFSV 550 560 570 580 590 600 EDYAEIRHHT DGKWKDWDPK KPPNEYIELA HGFAEKPDVW IRPKDSFVLE AKASSVGPSD 610 620 630 640 650 660 QFALGFTLRF PRFRKLRKDK SWDQGLSVQE FQDLRRRVEE EAQEKTMSVE NTKRRAVKRV 670 680 690 700 710 720 KKELVIAGTD STPVQFEGEK SKVFEGLEFC VLSESLKPFK KTKTQLETTI KANGGRITQR 730 740 750 760 770 780 HAARSDLILI ADKRVVSVAS LIKKGDVDII RPNWVQDCLA QETDDGLLPY EERHLFHATE 790 800 810 820 830 840 GLREIARQNT DEFGDSYFRI VDVEELRQIL VDMSPHEKSE ERDEDAAEFA RQLKERGNDL 850 860 870 880 890 900 GERDSAVFGR CVVHLHVLPG GELDAFRLRN YIAFGGGEVT DGLPVDSSTH IMLVGGRDAE 910 920 930 940 KQDAAVSVRK DIGNRQKIPR VVASQWVEDS WKERTMLDEE RYRV

References

[1]

"Annotation of Verticillium albo-atrum VaMs.102." The Broad Institute Genome Sequencing Platform Ma L.-J.J., Klosterman S.J., Subbarao K., Dobinson K., Veronese P., Kang S., Gold S.E., Young S., Jaffe D., Gnerre S., Berlin A., Heiman D., Hepburn T., Sykes S., Chen Z., Alvarado L., Kodira C.D., Lander E. , Galagan J., Nusbaum C., Birren B. Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: VaMs.102 / ATCC MYA-4576 / FGSC 10136.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DS985221 Genomic DNA. Translation: EEY20557.1.
RefSeq	XP_003003105.1. XM_003003059.1.
3D structure databases
ProteinModelPortal	C9SP42.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	9537149.
KEGG	val:VDBG_06667.
Phylogenomic databases
KO	K10777.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR001357. BRCT_dom. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF00533. BRCT. 1 hit. PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SMART	SM00292. BRCT. 2 hits. [Graphical view]
SUPFAM	SSF52113. BRCT. 2 hits. SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50172. BRCT. 2 hits. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C9SP42_VERA1

Accession

Primary (citable) accession number: C9SP42

Entry history

Integrated into UniProtKB/TrEMBL:	November 24, 2009
Last sequence update:	November 24, 2009
Last modified:	March 6, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)