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C9SP42

- C9SP42_VERA1

UniProt

C9SP42 - C9SP42_VERA1

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Protein
Submitted name: DNA ligase
Gene
VDBG_06667
Organism
Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
ORF Names:VDBG_06667Imported
OrganismiVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
Taxonomic identifieri526221 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesHypocreomycetidaeGlomerellalesPlectosphaerellaceaemitosporic PlectosphaerellaceaeVerticillium
ProteomesiUP000008698: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliC9SP42.

Family & Domainsi

Phylogenomic databases

KOiK10777.
OrthoDBiEOG7QC84G.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 2 hits.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9SP42-1 [UniParc]FASTAAdd to Basket

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MSHREGQPSP SAAAIGEDER QYAVGGMTSQ EVNENYPGRP RNHSETFLFS    50
ELFKSLFNPL MENKKQPPGS GPPRAKLGPH GPSKPSPSEQ RRHIIDRFIS 100
RWRKNVGHDF YPAMRLILPD KDRDRGVYGL KENAIGKLLV KLMKIDKNSE 150
DGYNLLHWKL PGQTTASRMA GDFAGRAFEV LSKRPMRIEV GDMTIADVNE 200
LLDKLAGSSG ELENLEVFET FYERMNAEEL MWLIRIILKQ MKVGATEKTL 250
LHLWHPDAET LFNVSSSLRR VCWELFDPQV RLEQENTGVT LMQCFQPQLA 300
QFQMPASFQK MVDYLRPPRG SRGLKDDRGA WTRHLGKAFA AGVRNIILDG 350
EMITWDPDTD KIMQFGTLKT AALAEQKNPY NNTGPRPLFR VFDILYLNDQ 400
PLTRYTLRDR YNALRKAVIG VHRRIEVHEH EAATSADAIE PLLRKVVAEA 450
SEGLVLKNPR SMYRLNSRND DWLKVKPEYM TEFGESLDCV VIGGYYGSGK 500
RGGILSTYLC GLRVSENHIK AGANPEKCFS LFKVGGGFSV EDYAEIRHHT 550
DGKWKDWDPK KPPNEYIELA HGFAEKPDVW IRPKDSFVLE AKASSVGPSD 600
QFALGFTLRF PRFRKLRKDK SWDQGLSVQE FQDLRRRVEE EAQEKTMSVE 650
NTKRRAVKRV KKELVIAGTD STPVQFEGEK SKVFEGLEFC VLSESLKPFK 700
KTKTQLETTI KANGGRITQR HAARSDLILI ADKRVVSVAS LIKKGDVDII 750
RPNWVQDCLA QETDDGLLPY EERHLFHATE GLREIARQNT DEFGDSYFRI 800
VDVEELRQIL VDMSPHEKSE ERDEDAAEFA RQLKERGNDL GERDSAVFGR 850
CVVHLHVLPG GELDAFRLRN YIAFGGGEVT DGLPVDSSTH IMLVGGRDAE 900
KQDAAVSVRK DIGNRQKIPR VVASQWVEDS WKERTMLDEE RYRV 944
Length:944
Mass (Da):107,488
Last modified:November 24, 2009 - v1
Checksum:i448065C4B55155B6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS985221 Genomic DNA. Translation: EEY20557.1.
RefSeqiXP_003003105.1. XM_003003059.1.

Genome annotation databases

GeneIDi9537149.
KEGGival:VDBG_06667.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS985221 Genomic DNA. Translation: EEY20557.1 .
RefSeqi XP_003003105.1. XM_003003059.1.

3D structure databases

ProteinModelPortali C9SP42.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9537149.
KEGGi val:VDBG_06667.

Phylogenomic databases

KOi K10777.
OrthoDBi EOG7QC84G.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
PROSITEi PS50172. BRCT. 2 hits.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: VaMs.102 / ATCC MYA-4576 / FGSC 10136.

Entry informationi

Entry nameiC9SP42_VERA1
AccessioniPrimary (citable) accession number: C9SP42
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: April 16, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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