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Protein

Endo-1,4-beta-xylanase

Gene

VDBG_02878

Organism
Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

Pathwayi: xylan degradation

This protein is involved in the pathway xylan degradation, which is part of Glycan degradation.PROSITE-ProRule annotation
View all proteins of this organism that are known to be involved in the pathway xylan degradation and in Glycan degradation.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei127NucleophilePROSITE-ProRule annotation1
Active sitei218Proton donorPROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidasePROSITE-ProRule annotation, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradationPROSITE-ProRule annotationImported

Enzyme and pathway databases

UniPathwayiUPA00114

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanasePROSITE-ProRule annotation (EC:3.2.1.8PROSITE-ProRule annotation)
Gene namesi
ORF Names:VDBG_02878Imported
OrganismiVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)Imported
Taxonomic identifieri526221 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesHypocreomycetidaeGlomerellalesPlectosphaerellaceaeVerticillium
Proteomesi
  • UP000008698 Componenti: Unassembled WGS sequence

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_500300190320 – 242Endo-1,4-beta-xylanaseSequence analysisAdd BLAST223

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini43 – 231GH11InterPro annotationAdd BLAST189

Sequence similaritiesi

Belongs to the glycosyl hydrolase 11 (cellulase G) family.PROSITE-ProRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IHTC Eukaryota
ENOG410YH6C LUCA
KOiK01181
OrthoDBiEOG092C4K17

Family and domain databases

Gene3Di2.60.120.180, 1 hit
InterProiView protein in InterPro
IPR013320 ConA-like_dom_sf
IPR013319 GH11/12
IPR018208 GH11_AS_1
IPR033119 GH11_AS_2
IPR033123 GH11_dom
IPR001137 Glyco_hydro_11
PfamiView protein in Pfam
PF00457 Glyco_hydro_11, 1 hit
PRINTSiPR00911 GLHYDRLASE11
SUPFAMiSSF49899 SSF49899, 1 hit
PROSITEiView protein in PROSITE
PS00776 GH11_1, 1 hit
PS00777 GH11_2, 1 hit
PS51761 GH11_3, 1 hit

Sequencei

Sequence statusi: Complete.

C9SCF4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVTFKSLLLA ASALTAVLGR PFDNFDGPDV NITDAGELLE RRQVTANSEG
60 70 80 90 100
THNGYFYSWW SDGGGQVTYT MGAGSRYSVT WKDTGNFVGG KGWNPGTGRT
110 120 130 140 150
INYGGSFSPQ GNGYLAVYGW TRNPLIEYYV VESYGTYNPG SGGQLKGTVT
160 170 180 190 200
TDGGTYNVYV STRTNQPSID GTRTFQQYWS VRTSKRVGGA VTMQNHFNAW
210 220 230 240
AQFGMNLGSH YYQIVATEGY QSSGSSDIYV QTQCKSPWDS GR
Length:242
Mass (Da):26,434
Last modified:November 24, 2009 - v1
Checksum:i0745F05DB80B232C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS985216 Genomic DNA Translation: EEY16769.1
RefSeqiXP_003006739.1, XM_003006693.1

Genome annotation databases

EnsemblFungiiEEY16769; EEY16769; VDBG_02878
GeneIDi9532881
KEGGival:VDBG_02878

Similar proteinsi

Entry informationi

Entry nameiC9SCF4_VERA1
AccessioniPrimary (citable) accession number: C9SCF4
Entry historyiIntegrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: March 28, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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