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C9S6B2

- C9S6B2_VERA1

UniProt

C9S6B2 - C9S6B2_VERA1

Protein
Submitted name:

RNA polymerase II transcription factor B subunit 5

Gene

VDBG_00532

Organism
Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
  1. Functioni

    GO - Biological processi

    1. nucleotide-excision repair Source: InterPro
    2. regulation of transcription, DNA-templated Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA polymerase II transcription factor B subunit 5Imported
    Gene namesi
    ORF Names:VDBG_00532Imported
    OrganismiVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)Imported
    Taxonomic identifieri526221 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesHypocreomycetidaeGlomerellalesPlectosphaerellaceaemitosporic PlectosphaerellaceaeVerticillium
    ProteomesiUP000008698: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. core TFIIH complex Source: InterPro

    Structurei

    3D structure databases

    ProteinModelPortaliC9S6B2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK10845.
    OrthoDBiEOG7VTF1M.

    Family and domain databases

    Gene3Di3.30.70.1220. 1 hit.
    InterProiIPR009400. TFIIH_TTDA/Tfb5.
    [Graphical view]
    PfamiPF06331. Tbf5. 1 hit.
    [Graphical view]
    SUPFAMiSSF142897. SSF142897. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C9S6B2-1 [UniParc]FASTAAdd to Basket

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    MPRAIRGVLV ECDPSIKSII VNIDSSNHDF IIEDLDDQRV VVKENMVGEL   50
    KRRLDDRLKE TQQIVEDSGS E 71
    Length:71
    Mass (Da):8,108
    Last modified:November 24, 2009 - v1
    Checksum:i08CFBF56C95AF199
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS985214 Genomic DNA. Translation: EEY14424.1.
    RefSeqiXP_003008850.1. XM_003008804.1.

    Genome annotation databases

    GeneIDi9529205.
    KEGGival:VDBG_00532.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS985214 Genomic DNA. Translation: EEY14424.1 .
    RefSeqi XP_003008850.1. XM_003008804.1.

    3D structure databases

    ProteinModelPortali C9S6B2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 9529205.
    KEGGi val:VDBG_00532.

    Phylogenomic databases

    KOi K10845.
    OrthoDBi EOG7VTF1M.

    Family and domain databases

    Gene3Di 3.30.70.1220. 1 hit.
    InterProi IPR009400. TFIIH_TTDA/Tfb5.
    [Graphical view ]
    Pfami PF06331. Tbf5. 1 hit.
    [Graphical view ]
    SUPFAMi SSF142897. SSF142897. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: VaMs.102 / ATCC MYA-4576 / FGSC 10136Imported.

    Entry informationi

    Entry nameiC9S6B2_VERA1
    AccessioniPrimary (citable) accession number: C9S6B2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 24, 2009
    Last sequence update: November 24, 2009
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3