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Protein
Submitted name:

RNA polymerase II transcription factor B subunit 5

Gene

VDBG_00532

Organism
Verticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. nucleotide-excision repair Source: InterPro
  2. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase II transcription factor B subunit 5Imported
Gene namesi
ORF Names:VDBG_00532Imported
OrganismiVerticillium alfalfae (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (Verticillium wilt of alfalfa) (Verticillium albo-atrum)Imported
Taxonomic identifieri526221 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesHypocreomycetidaeGlomerellalesPlectosphaerellaceaemitosporic PlectosphaerellaceaeVerticillium
ProteomesiUP000008698: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. core TFIIH complex Source: InterPro
Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliC9S6B2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10845.
OrthoDBiEOG7VTF1M.

Family and domain databases

Gene3Di3.30.70.1220. 1 hit.
InterProiIPR009400. TFIIH_TTDA/Tfb5.
[Graphical view]
PfamiPF06331. Tbf5. 1 hit.
[Graphical view]
SUPFAMiSSF142897. SSF142897. 1 hit.

Sequencei

Sequence statusi: Complete.

C9S6B2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPRAIRGVLV ECDPSIKSII VNIDSSNHDF IIEDLDDQRV VVKENMVGEL
60 70
KRRLDDRLKE TQQIVEDSGS E
Length:71
Mass (Da):8,108
Last modified:November 24, 2009 - v1
Checksum:i08CFBF56C95AF199
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS985214 Genomic DNA. Translation: EEY14424.1.
RefSeqiXP_003008850.1. XM_003008804.1.

Genome annotation databases

GeneIDi9529205.
KEGGival:VDBG_00532.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS985214 Genomic DNA. Translation: EEY14424.1.
RefSeqiXP_003008850.1. XM_003008804.1.

3D structure databases

ProteinModelPortaliC9S6B2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi9529205.
KEGGival:VDBG_00532.

Phylogenomic databases

KOiK10845.
OrthoDBiEOG7VTF1M.

Family and domain databases

Gene3Di3.30.70.1220. 1 hit.
InterProiIPR009400. TFIIH_TTDA/Tfb5.
[Graphical view]
PfamiPF06331. Tbf5. 1 hit.
[Graphical view]
SUPFAMiSSF142897. SSF142897. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: VaMs.102 / ATCC MYA-4576 / FGSC 10136Imported.

Entry informationi

Entry nameiC9S6B2_VERA1
AccessioniPrimary (citable) accession number: C9S6B2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: January 7, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.