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C9RZW4 (C9RZW4_GEOSY) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phosphopentomutase HAMAP-Rule MF_00740
EC=5.4.2.7 HAMAP-Rule MF_00740
Alternative name(s):
Phosphodeoxyribomutase HAMAP-Rule MF_00740
Gene names
Name:deoB HAMAP-Rule MF_00740
Ordered Locus Names:GYMC61_0368 EMBL ACX77050.1
OrganismGeobacillus sp. (strain Y412MC61) [Complete proteome] [HAMAP] EMBL ACX77050.1
Taxonomic identifier544556 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Geobacillus

Protein attributes

Sequence length393 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity. HAMAP-Rule MF_00740 SAAS SAAS024052

Catalytic activity

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate. HAMAP-Rule MF_00740 SAAS SAAS024052

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate. HAMAP-Rule MF_00740 SAAS SAAS024052

Cofactor

Binds 1 or 2 manganese ions By similarity. HAMAP-Rule MF_00740 SAAS SAAS024052

Pathway

Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. HAMAP-Rule MF_00740 SAAS SAAS024052

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00740 SAAS SAAS024052.

Sequence similarities

Belongs to the phosphopentomutase family. HAMAP-Rule MF_00740

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding141Manganese By similarity HAMAP-Rule MF_00740
Metal binding2921Manganese By similarity HAMAP-Rule MF_00740
Metal binding3281Manganese By similarity HAMAP-Rule MF_00740
Metal binding3291Manganese By similarity HAMAP-Rule MF_00740
Metal binding3401Manganese By similarity HAMAP-Rule MF_00740

Sequences

Sequence LengthMass (Da)Tools
C9RZW4 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: AEFA63DF3DA5BBDE

FASTA39343,706
        10         20         30         40         50         60 
MKATYRRVFL IVMDSVGIGE APDAEKYNDK GADTLGHIAE YRGGLYMPNM AKLGLSHIRE 

        70         80         90        100        110        120 
IKGVPKVDRP LAYYTKMKEA SAGKDTMTGH WELMGLRIDK PFRVFPNGFP DELIAELERR 

       130        140        150        160        170        180 
TGRNVIGNKP ASGTAIIEEL GEEHMKTGAI IVYTSADSVL QIAAHEQVVP LDELYRICEI 

       190        200        210        220        230        240 
ARELTRDEPY MVGRVIARPF IGTPGHFERT ANRHDYALKP FGKTVMNELK DAGYEVIAIG 

       250        260        270        280        290        300 
KIADIYDNEG VTQSLRTTSN MDGMDKLVDT LGMDFTGLSF VNLVDFDAKY GHRRDPKGYG 

       310        320        330        340        350        360 
DALEEFDARL ADVLPRLTAD DLLIITADHG NDPIHHGTDH TREYVPLLVY SPRFRGGKPL 

       370        380        390 
PVRETFADVG ATIADNFQVN RPPYGTSFLA DLA

« Hide

References

[1]"Complete sequence of chromosome of Geobacillus sp. Y412MC61."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Brumm P., Mead D.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Y412MC61 EMBL ACX77050.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001794 Genomic DNA. Translation: ACX77050.1.
RefSeqYP_003251532.1. NC_013411.1.

3D structure databases

ProteinModelPortalC9RZW4.
ModBaseSearch...

Protein-protein interaction databases

STRING544556.GYMC61_0368.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX77050; ACX77050; GYMC61_0368.
GeneID8524174.
KEGGgyc:GYMC61_0368.
PATRIC32162185. VBIGeoSp85804_0393.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1015.
HOGENOMHOG000008159.
KOK01839.
OMAPNMAKLG.

Enzyme and pathway databases

BioCycGSP544556:GI3L-443-MONOMER.
UniPathwayUPA00087; UER00173.

Family and domain databases

Gene3D3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPMF_00740. Phosphopentomut.
InterProIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFPIRSF001491. Ppentomutase. 1 hit.
SUPFAMSSF53649. Alkaline_phosphatase_core. 1 hit.
SSF143856. SSF143856. 1 hit.
TIGRFAMsTIGR01696. deoB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC9RZW4_GEOSY
AccessionPrimary (citable) accession number: C9RZW4
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info